miRNA display CGI


Results 1 - 20 of 220 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14003 3' -56.3 NC_003521.1 + 53 0.66 0.950701
Target:  5'- aGUCACgGAaccgguuucCGCgGCGGCgugCGGCgggCCg -3'
miRNA:   3'- -CAGUGgCU---------GUG-CGCCGaaaGCCGa--GG- -5'
14003 3' -56.3 NC_003521.1 + 1317 0.73 0.672877
Target:  5'- -gCGCCGGCgacgugGCGCGGCUguaUCGG-UCCa -3'
miRNA:   3'- caGUGGCUG------UGCGCCGAa--AGCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 4364 0.66 0.950701
Target:  5'- uUCGCCG-CuuGCGGCcgagcaGGUUCCa -3'
miRNA:   3'- cAGUGGCuGugCGCCGaaag--CCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 6156 0.66 0.954568
Target:  5'- --aGCCaAUGCGcCGGCUc-CGGCUCCu -3'
miRNA:   3'- cagUGGcUGUGC-GCCGAaaGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 8395 0.69 0.859269
Target:  5'- aGUCGaccuCCGACACGCaGGCgc-UGGCguugCCg -3'
miRNA:   3'- -CAGU----GGCUGUGCG-CCGaaaGCCGa---GG- -5'
14003 3' -56.3 NC_003521.1 + 11578 0.69 0.880561
Target:  5'- cUCACCGcaaGCAccucCGCGGCccgCGGgUCCa -3'
miRNA:   3'- cAGUGGC---UGU----GCGCCGaaaGCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 14391 0.66 0.954568
Target:  5'- --aGCUGGCGCGCuacGGCgugUCGcGCUCg -3'
miRNA:   3'- cagUGGCUGUGCG---CCGaa-AGC-CGAGg -5'
14003 3' -56.3 NC_003521.1 + 14918 0.66 0.94662
Target:  5'- cGUCACCGGCGCuuCGaGCgcgagCGGCagcgCCa -3'
miRNA:   3'- -CAGUGGCUGUGc-GC-CGaaa--GCCGa---GG- -5'
14003 3' -56.3 NC_003521.1 + 16508 0.71 0.776916
Target:  5'- -gCACgGGC-UGCGGCgcUCGGCUCg -3'
miRNA:   3'- caGUGgCUGuGCGCCGaaAGCCGAGg -5'
14003 3' -56.3 NC_003521.1 + 16509 0.66 0.964922
Target:  5'- aGUCACCGugACGgGGgcgUCuGGCcaCCa -3'
miRNA:   3'- -CAGUGGCugUGCgCCgaaAG-CCGa-GG- -5'
14003 3' -56.3 NC_003521.1 + 16715 0.73 0.663074
Target:  5'- -gCGCgUGAUGCGCGGCgagUUCGGCgaccgCCg -3'
miRNA:   3'- caGUG-GCUGUGCGCCGa--AAGCCGa----GG- -5'
14003 3' -56.3 NC_003521.1 + 17222 0.69 0.866563
Target:  5'- cGUCGCCGuCGCGCGGUa--UGGCaagcgagCCg -3'
miRNA:   3'- -CAGUGGCuGUGCGCCGaaaGCCGa------GG- -5'
14003 3' -56.3 NC_003521.1 + 17357 0.69 0.844116
Target:  5'- --gGCCGugACGcCGGCgcggCGGC-CCa -3'
miRNA:   3'- cagUGGCugUGC-GCCGaaa-GCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 17501 0.67 0.93307
Target:  5'- -cCGCCGGuCACgGCGGUUccCGGC-CCg -3'
miRNA:   3'- caGUGGCU-GUG-CGCCGAaaGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 18539 0.71 0.749525
Target:  5'- -aCGCUGGCACGgGGCUcUgGGCaCCa -3'
miRNA:   3'- caGUGGCUGUGCgCCGAaAgCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 18701 0.68 0.911911
Target:  5'- aUgGCCGGCGCGaucCGGCUgu-GGCUgCCg -3'
miRNA:   3'- cAgUGGCUGUGC---GCCGAaagCCGA-GG- -5'
14003 3' -56.3 NC_003521.1 + 19211 0.69 0.873662
Target:  5'- aUCGCuCG-UGCGaccuGGCUUUCGGCUCg -3'
miRNA:   3'- cAGUG-GCuGUGCg---CCGAAAGCCGAGg -5'
14003 3' -56.3 NC_003521.1 + 22409 0.66 0.950701
Target:  5'- uGUCGCUGGCcaugcuGCGCGGCg--UGGCcgaguaCCg -3'
miRNA:   3'- -CAGUGGCUG------UGCGCCGaaaGCCGa-----GG- -5'
14003 3' -56.3 NC_003521.1 + 22453 0.69 0.851785
Target:  5'- uUCACgCGGCACGCcuGGCUcaCGGUggCCu -3'
miRNA:   3'- cAGUG-GCUGUGCG--CCGAaaGCCGa-GG- -5'
14003 3' -56.3 NC_003521.1 + 25208 0.66 0.951097
Target:  5'- cUCACCGACAaGaCGGCcgUguaucucccucccaGGCUCCg -3'
miRNA:   3'- cAGUGGCUGUgC-GCCGa-Aag------------CCGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.