miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14003 3' -56.3 NC_003521.1 + 152807 0.72 0.721273
Target:  5'- gGUCACCGGCAgGUGGUacagcUCGGCgUCg -3'
miRNA:   3'- -CAGUGGCUGUgCGCCGaa---AGCCG-AGg -5'
14003 3' -56.3 NC_003521.1 + 36064 0.73 0.663074
Target:  5'- -cCGCCGACACaacaggGCGGCgg-CGGCgccUCCa -3'
miRNA:   3'- caGUGGCUGUG------CGCCGaaaGCCG---AGG- -5'
14003 3' -56.3 NC_003521.1 + 154474 0.73 0.672877
Target:  5'- gGUCACCGGCAcCGcCGGCgc-CGGCaagaccUCCa -3'
miRNA:   3'- -CAGUGGCUGU-GC-GCCGaaaGCCG------AGG- -5'
14003 3' -56.3 NC_003521.1 + 201545 0.73 0.672877
Target:  5'- -gCGCCGGCgacgugGCGCGGCUguaUCGG-UCCa -3'
miRNA:   3'- caGUGGCUG------UGCGCCGAa--AGCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 126263 0.73 0.693354
Target:  5'- uUCugCGACACGUGGUacguggugcugaugUCGcGCUCCu -3'
miRNA:   3'- cAGugGCUGUGCGCCGaa------------AGC-CGAGG- -5'
14003 3' -56.3 NC_003521.1 + 133378 0.72 0.701104
Target:  5'- -cCGCCGGCacaGCGCGGCggUccgcgcuuucgcgUCGGCUCUc -3'
miRNA:   3'- caGUGGCUG---UGCGCCGa-A-------------AGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 180769 0.72 0.70207
Target:  5'- gGUCGCCaGcCAUccgGCGGCUUUUGGgUCCu -3'
miRNA:   3'- -CAGUGG-CuGUG---CGCCGAAAGCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 57151 0.72 0.711703
Target:  5'- cGUCgGCC-ACGCGCGGCaggucgUCGGCgugCCg -3'
miRNA:   3'- -CAG-UGGcUGUGCGCCGaa----AGCCGa--GG- -5'
14003 3' -56.3 NC_003521.1 + 68528 0.72 0.711703
Target:  5'- -cCACCGACACcggacgGCGGCag-CGGCcgCCa -3'
miRNA:   3'- caGUGGCUGUG------CGCCGaaaGCCGa-GG- -5'
14003 3' -56.3 NC_003521.1 + 112356 0.73 0.653248
Target:  5'- -aCACCGuacGCACGCGGCggcugCGGCgucucgUCCa -3'
miRNA:   3'- caGUGGC---UGUGCGCCGaaa--GCCG------AGG- -5'
14003 3' -56.3 NC_003521.1 + 195771 0.73 0.643406
Target:  5'- cGUUGCCuGGCACgaGCGGCg--CGGCUCUc -3'
miRNA:   3'- -CAGUGG-CUGUG--CGCCGaaaGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 221904 0.74 0.604027
Target:  5'- aUUGCCGGCGCGCGGCgccacccUUCggGGCUgCCg -3'
miRNA:   3'- cAGUGGCUGUGCGCCGa------AAG--CCGA-GG- -5'
14003 3' -56.3 NC_003521.1 + 149110 0.77 0.435647
Target:  5'- cGUCGCCaaGCugGUGGUcaUCGGCUCCu -3'
miRNA:   3'- -CAGUGGc-UGugCGCCGaaAGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 224735 0.76 0.498438
Target:  5'- cUCGCCGACGCagGCGGCcagcgcgUCggGGCUCCg -3'
miRNA:   3'- cAGUGGCUGUG--CGCCGaa-----AG--CCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 132810 0.76 0.507744
Target:  5'- -aCGCCGACgaagGCGUGGUUUUCGcCUCCg -3'
miRNA:   3'- caGUGGCUG----UGCGCCGAAAGCcGAGG- -5'
14003 3' -56.3 NC_003521.1 + 53197 0.75 0.536083
Target:  5'- -cCAgCGGCGCGCGGCc--CGGCUCg -3'
miRNA:   3'- caGUgGCUGUGCGCCGaaaGCCGAGg -5'
14003 3' -56.3 NC_003521.1 + 192039 0.75 0.545654
Target:  5'- -cCGCCGGCguGCGCGGCagacgCGGCgUCCg -3'
miRNA:   3'- caGUGGCUG--UGCGCCGaaa--GCCG-AGG- -5'
14003 3' -56.3 NC_003521.1 + 192103 0.75 0.564953
Target:  5'- cGUCGCCGGCGucuccaccucuCcCGGCcucgUCGGCUCCg -3'
miRNA:   3'- -CAGUGGCUGU-----------GcGCCGaa--AGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 74702 0.74 0.594214
Target:  5'- -aCGgCGGCGcCGCGGCag-CGGCUCCc -3'
miRNA:   3'- caGUgGCUGU-GCGCCGaaaGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 214817 0.74 0.604027
Target:  5'- -gCGCCGG-GCGCGGCgacggCGGUUCCa -3'
miRNA:   3'- caGUGGCUgUGCGCCGaaa--GCCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.