Results 1 - 20 of 220 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14003 | 3' | -56.3 | NC_003521.1 | + | 190362 | 1.12 | 0.003082 |
Target: 5'- uGUCACCGACACGCGGCUUUCGGCUCCg -3' miRNA: 3'- -CAGUGGCUGUGCGCCGAAAGCCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 120922 | 0.8 | 0.318065 |
Target: 5'- cGUUugCGGCugccCGCGGCgg-CGGCUCCg -3' miRNA: 3'- -CAGugGCUGu---GCGCCGaaaGCCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 36042 | 0.8 | 0.332279 |
Target: 5'- cUUACCGGCACGUGGCUUU-GGCcgUCCu -3' miRNA: 3'- cAGUGGCUGUGCGCCGAAAgCCG--AGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 27015 | 0.77 | 0.434783 |
Target: 5'- -gCACCGugAUGUGGCUgcgccguUUCGGCgUCCa -3' miRNA: 3'- caGUGGCugUGCGCCGA-------AAGCCG-AGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 149110 | 0.77 | 0.435647 |
Target: 5'- cGUCGCCaaGCugGUGGUcaUCGGCUCCu -3' miRNA: 3'- -CAGUGGc-UGugCGCCGaaAGCCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 224735 | 0.76 | 0.498438 |
Target: 5'- cUCGCCGACGCagGCGGCcagcgcgUCggGGCUCCg -3' miRNA: 3'- cAGUGGCUGUG--CGCCGaa-----AG--CCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 132810 | 0.76 | 0.507744 |
Target: 5'- -aCGCCGACgaagGCGUGGUUUUCGcCUCCg -3' miRNA: 3'- caGUGGCUG----UGCGCCGAAAGCcGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 53197 | 0.75 | 0.536083 |
Target: 5'- -cCAgCGGCGCGCGGCc--CGGCUCg -3' miRNA: 3'- caGUgGCUGUGCGCCGaaaGCCGAGg -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 192039 | 0.75 | 0.545654 |
Target: 5'- -cCGCCGGCguGCGCGGCagacgCGGCgUCCg -3' miRNA: 3'- caGUGGCUG--UGCGCCGaaa--GCCG-AGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 192103 | 0.75 | 0.564953 |
Target: 5'- cGUCGCCGGCGucuccaccucuCcCGGCcucgUCGGCUCCg -3' miRNA: 3'- -CAGUGGCUGU-----------GcGCCGaa--AGCCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 230404 | 0.74 | 0.594214 |
Target: 5'- -cCGCCGACACGCGGUUUUUgagaugcggGGCgacgcgguaUCCa -3' miRNA: 3'- caGUGGCUGUGCGCCGAAAG---------CCG---------AGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 74702 | 0.74 | 0.594214 |
Target: 5'- -aCGgCGGCGcCGCGGCag-CGGCUCCc -3' miRNA: 3'- caGUgGCUGU-GCGCCGaaaGCCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 221904 | 0.74 | 0.604027 |
Target: 5'- aUUGCCGGCGCGCGGCgccacccUUCggGGCUgCCg -3' miRNA: 3'- cAGUGGCUGUGCGCCGa------AAG--CCGA-GG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 214817 | 0.74 | 0.604027 |
Target: 5'- -gCGCCGG-GCGCGGCgacggCGGUUCCa -3' miRNA: 3'- caGUGGCUgUGCGCCGaaa--GCCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 119783 | 0.74 | 0.633556 |
Target: 5'- --gACCGGCGCaGCGGCgacgaggUCGGCgCCg -3' miRNA: 3'- cagUGGCUGUG-CGCCGaa-----AGCCGaGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 75117 | 0.73 | 0.643406 |
Target: 5'- gGUgGCCcGCACGguggaCGGCUUUCGGCggCCg -3' miRNA: 3'- -CAgUGGcUGUGC-----GCCGAAAGCCGa-GG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 195771 | 0.73 | 0.643406 |
Target: 5'- cGUUGCCuGGCACgaGCGGCg--CGGCUCUc -3' miRNA: 3'- -CAGUGG-CUGUG--CGCCGaaaGCCGAGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 112356 | 0.73 | 0.653248 |
Target: 5'- -aCACCGuacGCACGCGGCggcugCGGCgucucgUCCa -3' miRNA: 3'- caGUGGC---UGUGCGCCGaaa--GCCG------AGG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 16715 | 0.73 | 0.663074 |
Target: 5'- -gCGCgUGAUGCGCGGCgagUUCGGCgaccgCCg -3' miRNA: 3'- caGUG-GCUGUGCGCCGa--AAGCCGa----GG- -5' |
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14003 | 3' | -56.3 | NC_003521.1 | + | 36064 | 0.73 | 0.663074 |
Target: 5'- -cCGCCGACACaacaggGCGGCgg-CGGCgccUCCa -3' miRNA: 3'- caGUGGCUGUG------CGCCGaaaGCCG---AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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