miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1401 3' -55.9 NC_001335.1 + 51781 0.66 0.688533
Target:  5'- -gGCACGuaGugccCUUuACAGCCACCGAg -3'
miRNA:   3'- ugCGUGUggCu---GAAcUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 45288 0.66 0.688533
Target:  5'- gACGUACAgCG---UGACAGggaCCACCGAc -3'
miRNA:   3'- -UGCGUGUgGCugaACUGUC---GGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 26502 0.66 0.677626
Target:  5'- gGCGgAUACUGAUUggucaucccGACAGCCuacuuGCCGAu -3'
miRNA:   3'- -UGCgUGUGGCUGAa--------CUGUCGG-----UGGCU- -5'
1401 3' -55.9 NC_001335.1 + 1333 0.66 0.677626
Target:  5'- cCGC-CGCCGGCUccacuuccGCcGCCACCGGu -3'
miRNA:   3'- uGCGuGUGGCUGAac------UGuCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 34501 0.66 0.677626
Target:  5'- cACGCACuACCGACccgGcACGGuCCACUa- -3'
miRNA:   3'- -UGCGUG-UGGCUGaa-C-UGUC-GGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 658 0.66 0.677626
Target:  5'- aGCGCGcCGCCGuuCUUGGCGGCguaAUCGc -3'
miRNA:   3'- -UGCGU-GUGGCu-GAACUGUCGg--UGGCu -5'
1401 3' -55.9 NC_001335.1 + 28931 0.66 0.666676
Target:  5'- cCGCGaGCUGuCaccGGCAGCCGCCGGc -3'
miRNA:   3'- uGCGUgUGGCuGaa-CUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 5601 0.66 0.666676
Target:  5'- -gGUGCGCCGGCcguagcGGCAGgCACCGu -3'
miRNA:   3'- ugCGUGUGGCUGaa----CUGUCgGUGGCu -5'
1401 3' -55.9 NC_001335.1 + 51846 0.66 0.655692
Target:  5'- uCGCuggucucggugGCAUCG-CUUGACAGUCGCCc- -3'
miRNA:   3'- uGCG-----------UGUGGCuGAACUGUCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 17136 0.66 0.655692
Target:  5'- cCGCACAucCCGGCgcuggcGACGGCCcUCGGc -3'
miRNA:   3'- uGCGUGU--GGCUGaa----CUGUCGGuGGCU- -5'
1401 3' -55.9 NC_001335.1 + 32624 0.66 0.655692
Target:  5'- cCGUugGCCGGCgcgGAU--CCACCGGa -3'
miRNA:   3'- uGCGugUGGCUGaa-CUGucGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 12210 0.66 0.655692
Target:  5'- cCGuCACGUCGAag-GACAgGCCGCCGAc -3'
miRNA:   3'- uGC-GUGUGGCUgaaCUGU-CGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 14377 0.66 0.633671
Target:  5'- cUGCGCACCGACguacacgUAGCCgACCGc -3'
miRNA:   3'- uGCGUGUGGCUGaacu---GUCGG-UGGCu -5'
1401 3' -55.9 NC_001335.1 + 16275 0.66 0.633671
Target:  5'- cGCGCucgGCAUgGACggcaucaaGGCAGCCGCCu- -3'
miRNA:   3'- -UGCG---UGUGgCUGaa------CUGUCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 8513 0.66 0.633671
Target:  5'- gACGCugaGCGCCGGCcaGA-GGCCAUCGGc -3'
miRNA:   3'- -UGCG---UGUGGCUGaaCUgUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 9178 0.67 0.622654
Target:  5'- gAUGCGCGCCGcCgcGuCGGUCAUCGAc -3'
miRNA:   3'- -UGCGUGUGGCuGaaCuGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 5919 0.67 0.622654
Target:  5'- cCGCACGggaCGuACUUGACAuCUACCGGu -3'
miRNA:   3'- uGCGUGUg--GC-UGAACUGUcGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 26021 0.67 0.578759
Target:  5'- cGCGUACcaACUGuucuGCUUGAgGGCCACUGu -3'
miRNA:   3'- -UGCGUG--UGGC----UGAACUgUCGGUGGCu -5'
1401 3' -55.9 NC_001335.1 + 38756 0.67 0.567875
Target:  5'- aGCGgAgACCGGCgagGGCuucGCCGCCGu -3'
miRNA:   3'- -UGCgUgUGGCUGaa-CUGu--CGGUGGCu -5'
1401 3' -55.9 NC_001335.1 + 51609 0.68 0.557043
Target:  5'- -gGCAagauucuCCGGUUUGACAGCCACCc- -3'
miRNA:   3'- ugCGUgu-----GGCUGAACUGUCGGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.