Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14016 | 3' | -55.8 | NC_003521.1 | + | 183266 | 1.12 | 0.003821 |
Target: 5'- aGGCGCGCGAGGACGAGGAGGAUUUCGg -3' miRNA: 3'- -CCGCGCGCUCCUGCUCCUCCUAAAGC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 16746 | 0.88 | 0.121335 |
Target: 5'- cGGCGCGCgcgcccgccgGAGGACGAGGAGGGUgaCGa -3' miRNA: 3'- -CCGCGCG----------CUCCUGCUCCUCCUAaaGC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 43614 | 0.82 | 0.26129 |
Target: 5'- aGCGCGacgacaaCGAGGACGAGGAGGAgg-CGg -3' miRNA: 3'- cCGCGC-------GCUCCUGCUCCUCCUaaaGC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 17059 | 0.82 | 0.274064 |
Target: 5'- cGGCGCcgacaGCGAGGACGAcgagugGGAGGAUUUgGg -3' miRNA: 3'- -CCGCG-----CGCUCCUGCU------CCUCCUAAAgC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 68197 | 0.77 | 0.491263 |
Target: 5'- gGGCGCGUGAGGAcCGAGGAcguGGAc---- -3' miRNA: 3'- -CCGCGCGCUCCU-GCUCCU---CCUaaagc -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 18094 | 0.77 | 0.482135 |
Target: 5'- cGGC-CGCGGGGACgGAGGAGGuag-CGg -3' miRNA: 3'- -CCGcGCGCUCCUG-CUCCUCCuaaaGC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 113359 | 0.75 | 0.576478 |
Target: 5'- gGGaCGgGcCGGGGGCGAGGAGGAgggUUaCGg -3' miRNA: 3'- -CC-GCgC-GCUCCUGCUCCUCCUa--AA-GC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 117928 | 0.74 | 0.635135 |
Target: 5'- cGGUGCGC-AGGACgGGGGAGGAg---- -3' miRNA: 3'- -CCGCGCGcUCCUG-CUCCUCCUaaagc -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 190580 | 0.74 | 0.674281 |
Target: 5'- cGGCGUGauCGAGGGCGAGGAGuGGccccgCGa -3' miRNA: 3'- -CCGCGC--GCUCCUGCUCCUC-CUaaa--GC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 19084 | 0.74 | 0.654741 |
Target: 5'- gGGC-CGUGAGGAgGAGGGGGAc---- -3' miRNA: 3'- -CCGcGCGCUCCUgCUCCUCCUaaagc -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 69453 | 0.74 | 0.635135 |
Target: 5'- aGGUGCGCGAGG-CGcAGGgcAGGAUcacgUCGa -3' miRNA: 3'- -CCGCGCGCUCCuGC-UCC--UCCUAa---AGC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 98227 | 0.74 | 0.654741 |
Target: 5'- cGGCGUGgGAGG-CGGGGAGGcgggggCGg -3' miRNA: 3'- -CCGCGCgCUCCuGCUCCUCCuaaa--GC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 170524 | 0.74 | 0.684007 |
Target: 5'- cGGCGUGUGAcggGGACGgggggcAGGAGGGUUUa- -3' miRNA: 3'- -CCGCGCGCU---CCUGC------UCCUCCUAAAgc -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 36774 | 0.73 | 0.703334 |
Target: 5'- cGCGCGUGGccuggcGGGCGuGGAGGAcgcgccUUUCGg -3' miRNA: 3'- cCGCGCGCU------CCUGCuCCUCCU------AAAGC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 199464 | 0.73 | 0.693695 |
Target: 5'- uGGCGCGCGuAGGuGCGAcGGuGGAUgacgCGa -3' miRNA: 3'- -CCGCGCGC-UCC-UGCU-CCuCCUAaa--GC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 148501 | 0.72 | 0.776896 |
Target: 5'- aGGCGgGCGgaugggauccGGGACGgggguggGGGAGGGUUUUa -3' miRNA: 3'- -CCGCgCGC----------UCCUGC-------UCCUCCUAAAGc -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 163985 | 0.72 | 0.777788 |
Target: 5'- aGGaCGCGCG-GGAaGAGGAGGAa---- -3' miRNA: 3'- -CC-GCGCGCuCCUgCUCCUCCUaaagc -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 49609 | 0.72 | 0.759732 |
Target: 5'- cGGCGC-UGGGGACGcGGAGGAcacggCGa -3' miRNA: 3'- -CCGCGcGCUCCUGCuCCUCCUaaa--GC- -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 44910 | 0.71 | 0.820694 |
Target: 5'- cGGCGCggcgGCGAGGACGAagacGAGGAc---- -3' miRNA: 3'- -CCGCG----CGCUCCUGCUc---CUCCUaaagc -5' |
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14016 | 3' | -55.8 | NC_003521.1 | + | 101724 | 0.71 | 0.820694 |
Target: 5'- uGCGCgGCGGGGGCGAGauGGGGAa---- -3' miRNA: 3'- cCGCG-CGCUCCUGCUC--CUCCUaaagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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