miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 3' -52.5 NC_003521.1 + 179876 1.13 0.005277
Target:  5'- gGCACAGCUGGAUGAGCGUCAUGAGACg -3'
miRNA:   3'- -CGUGUCGACCUACUCGCAGUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 20646 0.67 0.987729
Target:  5'- cGCGC-GCUGG-UGGGCGccuaCGUGAuGACc -3'
miRNA:   3'- -CGUGuCGACCuACUCGCa---GUACU-CUG- -5'
14022 3' -52.5 NC_003521.1 + 221834 0.67 0.989165
Target:  5'- uGCaACAGCUGGccgcuGUGGGCGUCcaccaccaGGGAa -3'
miRNA:   3'- -CG-UGUCGACC-----UACUCGCAGua------CUCUg -5'
14022 3' -52.5 NC_003521.1 + 124483 0.66 0.990467
Target:  5'- cGgGCGGCUGGucguAGCG-CGUGAGGa -3'
miRNA:   3'- -CgUGUCGACCuac-UCGCaGUACUCUg -5'
14022 3' -52.5 NC_003521.1 + 104831 0.71 0.901381
Target:  5'- aGUGCAGCUGGAucuccucggUGAagGCGUUGUG-GACg -3'
miRNA:   3'- -CGUGUCGACCU---------ACU--CGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 46377 0.71 0.919437
Target:  5'- aCGCGGCUGuGAgGGGCGcggggugCGUGGGGCg -3'
miRNA:   3'- cGUGUCGAC-CUaCUCGCa------GUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 7808 0.68 0.967399
Target:  5'- aGCgGCAGCUGGAc-GGCGUCA--AGGCc -3'
miRNA:   3'- -CG-UGUCGACCUacUCGCAGUacUCUG- -5'
14022 3' -52.5 NC_003521.1 + 157041 0.68 0.967399
Target:  5'- gGCGCGGUcGGAgGAGCG-CGgcggGGGGCg -3'
miRNA:   3'- -CGUGUCGaCCUaCUCGCaGUa---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 124165 0.68 0.980471
Target:  5'- aGCgGCGGCUGGA-GAGCGa---GAGGCc -3'
miRNA:   3'- -CG-UGUCGACCUaCUCGCaguaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 103403 0.67 0.984419
Target:  5'- uGCGC-GCUGG-UG-GCGUaCAUGAGGu -3'
miRNA:   3'- -CGUGuCGACCuACuCGCA-GUACUCUg -5'
14022 3' -52.5 NC_003521.1 + 177907 0.68 0.973213
Target:  5'- aGCGgGGCgagcgGGA-GGGCGUCGUcGGGAg -3'
miRNA:   3'- -CGUgUCGa----CCUaCUCGCAGUA-CUCUg -5'
14022 3' -52.5 NC_003521.1 + 162243 0.74 0.800479
Target:  5'- gGCGCuGGCgGGGUGGGCGUCAacgGGGGu -3'
miRNA:   3'- -CGUG-UCGaCCUACUCGCAGUa--CUCUg -5'
14022 3' -52.5 NC_003521.1 + 25810 0.67 0.98615
Target:  5'- -gACGGCucUGGcgGuGCGUUAcGAGACg -3'
miRNA:   3'- cgUGUCG--ACCuaCuCGCAGUaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 102462 0.73 0.843251
Target:  5'- gGCGCAGCaGGAUGAGCuggCAUaGGAUg -3'
miRNA:   3'- -CGUGUCGaCCUACUCGca-GUAcUCUG- -5'
14022 3' -52.5 NC_003521.1 + 155616 0.68 0.972393
Target:  5'- gGCGCGGCgccGGGUGAcgcaGUGUCGUacgcgaccgagcaaGGGACg -3'
miRNA:   3'- -CGUGUCGa--CCUACU----CGCAGUA--------------CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 17184 0.67 0.987729
Target:  5'- -gGCAGCUGGGcaGGCGcaUCGUG-GACg -3'
miRNA:   3'- cgUGUCGACCUacUCGC--AGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 122710 0.67 0.989165
Target:  5'- gGCGgGGCUGGA--GGCgGUCGUGgucguGGGCg -3'
miRNA:   3'- -CGUgUCGACCUacUCG-CAGUAC-----UCUG- -5'
14022 3' -52.5 NC_003521.1 + 18572 0.72 0.888171
Target:  5'- cGCGCAGCUGGA-GAGCG-CGcucGACu -3'
miRNA:   3'- -CGUGUCGACCUaCUCGCaGUacuCUG- -5'
14022 3' -52.5 NC_003521.1 + 177803 0.7 0.935339
Target:  5'- ----cGCUGG-UGGGCGUCGUG-GGCg -3'
miRNA:   3'- cguguCGACCuACUCGCAGUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 198921 0.67 0.982529
Target:  5'- aGCAgGGCguagaGGAUGGG-GUUgAUGAGGCa -3'
miRNA:   3'- -CGUgUCGa----CCUACUCgCAG-UACUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.