miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 3' -52.5 NC_003521.1 + 172273 0.67 0.986799
Target:  5'- gGCACAGCUGG-UGGGUGugggucuccuUCAUGucccacacagccuuGACg -3'
miRNA:   3'- -CGUGUCGACCuACUCGC----------AGUACu-------------CUG- -5'
14022 3' -52.5 NC_003521.1 + 32427 0.67 0.986799
Target:  5'- cGCACGGCcuccugacgguuacGGAUGGGCGUCA-GAu-- -3'
miRNA:   3'- -CGUGUCGa-------------CCUACUCGCAGUaCUcug -5'
14022 3' -52.5 NC_003521.1 + 25810 0.67 0.98615
Target:  5'- -gACGGCucUGGcgGuGCGUUAcGAGACg -3'
miRNA:   3'- cgUGUCG--ACCuaCuCGCAGUaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 213117 0.67 0.98615
Target:  5'- aCGC-GCUGGGUGuGGCGUgGUGcGGCc -3'
miRNA:   3'- cGUGuCGACCUAC-UCGCAgUACuCUG- -5'
14022 3' -52.5 NC_003521.1 + 103403 0.67 0.984419
Target:  5'- uGCGC-GCUGG-UG-GCGUaCAUGAGGu -3'
miRNA:   3'- -CGUGuCGACCuACuCGCA-GUACUCUg -5'
14022 3' -52.5 NC_003521.1 + 238229 0.67 0.982529
Target:  5'- gGCACGGCguc--GAGCGUCGuUGAGGu -3'
miRNA:   3'- -CGUGUCGaccuaCUCGCAGU-ACUCUg -5'
14022 3' -52.5 NC_003521.1 + 198921 0.67 0.982529
Target:  5'- aGCAgGGCguagaGGAUGGG-GUUgAUGAGGCa -3'
miRNA:   3'- -CGUgUCGa----CCUACUCgCAG-UACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 124165 0.68 0.980471
Target:  5'- aGCgGCGGCUGGA-GAGCGa---GAGGCc -3'
miRNA:   3'- -CG-UGUCGACCUaCUCGCaguaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 87662 0.68 0.978238
Target:  5'- gGCGCAGCccacgaugUGGuugcUGAGCGUg--GAGGCg -3'
miRNA:   3'- -CGUGUCG--------ACCu---ACUCGCAguaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 205174 0.68 0.978238
Target:  5'- gGCuugUAGCUGGugaucucgguAUGAGgGUCcgGAGGCc -3'
miRNA:   3'- -CGu--GUCGACC----------UACUCgCAGuaCUCUG- -5'
14022 3' -52.5 NC_003521.1 + 194922 0.68 0.975821
Target:  5'- uGCGCAuGCUGG-UGcucGGCGUCGUcuuGGACg -3'
miRNA:   3'- -CGUGU-CGACCuAC---UCGCAGUAc--UCUG- -5'
14022 3' -52.5 NC_003521.1 + 177907 0.68 0.973213
Target:  5'- aGCGgGGCgagcgGGA-GGGCGUCGUcGGGAg -3'
miRNA:   3'- -CGUgUCGa----CCUaCUCGCAGUA-CUCUg -5'
14022 3' -52.5 NC_003521.1 + 155616 0.68 0.972393
Target:  5'- gGCGCGGCgccGGGUGAcgcaGUGUCGUacgcgaccgagcaaGGGACg -3'
miRNA:   3'- -CGUGUCGa--CCUACU----CGCAGUA--------------CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 100128 0.68 0.970408
Target:  5'- cCGCGGCUGGcgGuccuGCGggaaggcCGUGGGGCu -3'
miRNA:   3'- cGUGUCGACCuaCu---CGCa------GUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 7808 0.68 0.967399
Target:  5'- aGCgGCAGCUGGAc-GGCGUCA--AGGCc -3'
miRNA:   3'- -CG-UGUCGACCUacUCGCAGUacUCUG- -5'
14022 3' -52.5 NC_003521.1 + 157041 0.68 0.967399
Target:  5'- gGCGCGGUcGGAgGAGCG-CGgcggGGGGCg -3'
miRNA:   3'- -CGUGUCGaCCUaCUCGCaGUa---CUCUG- -5'
14022 3' -52.5 NC_003521.1 + 168438 0.68 0.967399
Target:  5'- cCGCGGCggcgGGcgugaaGAGCGUgAUGGGGCg -3'
miRNA:   3'- cGUGUCGa---CCua----CUCGCAgUACUCUG- -5'
14022 3' -52.5 NC_003521.1 + 40062 0.69 0.960743
Target:  5'- uGCACAGacuCUGGAUGcGCGUC---AGGCa -3'
miRNA:   3'- -CGUGUC---GACCUACuCGCAGuacUCUG- -5'
14022 3' -52.5 NC_003521.1 + 166222 0.69 0.957085
Target:  5'- uGUACAGCUGGuagaaGAGCGUgAUGccgcccGGCg -3'
miRNA:   3'- -CGUGUCGACCua---CUCGCAgUACu-----CUG- -5'
14022 3' -52.5 NC_003521.1 + 120398 0.69 0.953202
Target:  5'- gGCACAGa-GGAUGGGUG-CAaaGAGACa -3'
miRNA:   3'- -CGUGUCgaCCUACUCGCaGUa-CUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.