miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14026 3' -59.1 NC_003521.1 + 187791 0.66 0.872771
Target:  5'- uGGACCcacuucgaCAGCGGCGGCGaccUGGguugGGAg -3'
miRNA:   3'- uCCUGGca------GUCGCCGCCGC---ACUa---CUU- -5'
14026 3' -59.1 NC_003521.1 + 186758 0.66 0.872771
Target:  5'- uGGGGCuCGgCGGCaucggcggaGGCGGCgGUGGUGGc -3'
miRNA:   3'- -UCCUG-GCaGUCG---------CCGCCG-CACUACUu -5'
14026 3' -59.1 NC_003521.1 + 50499 0.66 0.872771
Target:  5'- --aGCgUGUCGGCGGCGGUGgaGAUGGu -3'
miRNA:   3'- uccUG-GCAGUCGCCGCCGCa-CUACUu -5'
14026 3' -59.1 NC_003521.1 + 172324 0.66 0.872771
Target:  5'- cAGGcCgGUC-GCGGCGGaCG-GGUGAGg -3'
miRNA:   3'- -UCCuGgCAGuCGCCGCC-GCaCUACUU- -5'
14026 3' -59.1 NC_003521.1 + 57276 0.66 0.872771
Target:  5'- aAGcGACCcagcagcagGUCGGUGcGCGGCGacUGGUGGAu -3'
miRNA:   3'- -UC-CUGG---------CAGUCGC-CGCCGC--ACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 41097 0.66 0.865673
Target:  5'- cGGACCGcUCAacGCGGUGGUGcUGGUc-- -3'
miRNA:   3'- uCCUGGC-AGU--CGCCGCCGC-ACUAcuu -5'
14026 3' -59.1 NC_003521.1 + 193176 0.66 0.865673
Target:  5'- cAGGAgCCGgcgggAGCGGCGgaGCGUGAaGAAg -3'
miRNA:   3'- -UCCU-GGCag---UCGCCGC--CGCACUaCUU- -5'
14026 3' -59.1 NC_003521.1 + 38576 0.66 0.865673
Target:  5'- gAGGAcCCGUCA-UGGuCGGCGUuuUGAAg -3'
miRNA:   3'- -UCCU-GGCAGUcGCC-GCCGCAcuACUU- -5'
14026 3' -59.1 NC_003521.1 + 123191 0.66 0.86132
Target:  5'- gGGGACCGUaggccgcauaCGGCgccggguaggacgggGGCGGCGguaGGUGGu -3'
miRNA:   3'- -UCCUGGCA----------GUCG---------------CCGCCGCa--CUACUu -5'
14026 3' -59.1 NC_003521.1 + 186849 0.66 0.85838
Target:  5'- uGGcGGCC--CAGCGGCGGCGUGc---- -3'
miRNA:   3'- -UC-CUGGcaGUCGCCGCCGCACuacuu -5'
14026 3' -59.1 NC_003521.1 + 191077 0.66 0.8509
Target:  5'- cGGcGACCGU-GGUGGCGGCG-GcgGGc -3'
miRNA:   3'- -UC-CUGGCAgUCGCCGCCGCaCuaCUu -5'
14026 3' -59.1 NC_003521.1 + 98211 0.66 0.8509
Target:  5'- --uGCUGUCGGCGggcaGCGGCGUGG-GAGg -3'
miRNA:   3'- uccUGGCAGUCGC----CGCCGCACUaCUU- -5'
14026 3' -59.1 NC_003521.1 + 155258 0.66 0.843238
Target:  5'- gGGGGCgG-CGGCGGCGGCGc------ -3'
miRNA:   3'- -UCCUGgCaGUCGCCGCCGCacuacuu -5'
14026 3' -59.1 NC_003521.1 + 102984 0.66 0.843238
Target:  5'- cGGGGCgGccCAGCcGCGGCGUGAg--- -3'
miRNA:   3'- -UCCUGgCa-GUCGcCGCCGCACUacuu -5'
14026 3' -59.1 NC_003521.1 + 127370 0.67 0.835398
Target:  5'- uGGugCG-CGGCaGGU-GCGUGAUGAAg -3'
miRNA:   3'- uCCugGCaGUCG-CCGcCGCACUACUU- -5'
14026 3' -59.1 NC_003521.1 + 104691 0.67 0.835398
Target:  5'- gGGGGCCGUgGGCGGCGucgaCGUGc---- -3'
miRNA:   3'- -UCCUGGCAgUCGCCGCc---GCACuacuu -5'
14026 3' -59.1 NC_003521.1 + 107329 0.67 0.835398
Target:  5'- uGGGCCccgCAGCaGCGGCGccaGGUGAu -3'
miRNA:   3'- uCCUGGca-GUCGcCGCCGCa--CUACUu -5'
14026 3' -59.1 NC_003521.1 + 119780 0.67 0.835398
Target:  5'- uGGGACCGgcgCAGCGGCGaCGaGGUcGGc -3'
miRNA:   3'- -UCCUGGCa--GUCGCCGCcGCaCUA-CUu -5'
14026 3' -59.1 NC_003521.1 + 117996 0.67 0.827389
Target:  5'- cAGGACgaCGacggUAGCGGCGGCGUGu---- -3'
miRNA:   3'- -UCCUG--GCa---GUCGCCGCCGCACuacuu -5'
14026 3' -59.1 NC_003521.1 + 69074 0.67 0.827389
Target:  5'- gAGuGACCcguGUCAuGaUGGUGGCGUGGUGGu -3'
miRNA:   3'- -UC-CUGG---CAGU-C-GCCGCCGCACUACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.