Results 1 - 20 of 655 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14035 | 5' | -59.1 | NC_003521.1 | + | 139090 | 0.65 | 0.905244 |
Target: 5'- cCUGCCGGCcuuccccAUCucgcccccgcCGCGCAUCGuGCUGa -3' miRNA: 3'- -GGCGGUCG-------UAGu---------GCGCGUAGC-CGGCg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 108946 | 0.65 | 0.904657 |
Target: 5'- gCUGCCcGa--CACGCGCGgcacgauggccgUGGCCGCc -3' miRNA: 3'- -GGCGGuCguaGUGCGCGUa-----------GCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 149280 | 0.65 | 0.904068 |
Target: 5'- gCGUCGGCGcccacaagUACGUGCuggagcgcgacgacgCGGCCGCc -3' miRNA: 3'- gGCGGUCGUa-------GUGCGCGua-------------GCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 40340 | 0.66 | 0.899886 |
Target: 5'- gCCGCCAGUuuggccaggAUCACggcgcuGCGCAg-GGCCu- -3' miRNA: 3'- -GGCGGUCG---------UAGUG------CGCGUagCCGGcg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 164506 | 0.66 | 0.899886 |
Target: 5'- uUCGUCaagGGCGUgACGCGCGaCGuGCUGUc -3' miRNA: 3'- -GGCGG---UCGUAgUGCGCGUaGC-CGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 95225 | 0.66 | 0.899886 |
Target: 5'- aCUGCagCAGCGaggcCACGgccgcCGCGUCGuGCCGCc -3' miRNA: 3'- -GGCG--GUCGUa---GUGC-----GCGUAGC-CGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 95466 | 0.66 | 0.899886 |
Target: 5'- gCGCCcguGCAUCACGUgGCAcUCGaCCaGCg -3' miRNA: 3'- gGCGGu--CGUAGUGCG-CGU-AGCcGG-CG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 131872 | 0.66 | 0.899886 |
Target: 5'- aCgGCCAuCGUgcCGCGCGUGUCGGgCaGCg -3' miRNA: 3'- -GgCGGUcGUA--GUGCGCGUAGCCgG-CG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 146151 | 0.66 | 0.899886 |
Target: 5'- uCCGCgAGCG-CGaggagaGCGagGUgGGCCGCg -3' miRNA: 3'- -GGCGgUCGUaGUg-----CGCg-UAgCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 9844 | 0.66 | 0.899886 |
Target: 5'- cCCGCUGGCGUCAUGauaGCAcccuUCGaGCUcccgagGCa -3' miRNA: 3'- -GGCGGUCGUAGUGCg--CGU----AGC-CGG------CG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 28568 | 0.66 | 0.899886 |
Target: 5'- aCCGCCGGCcaccgacUACGCGgAcggCGgGCUGCu -3' miRNA: 3'- -GGCGGUCGua-----GUGCGCgUa--GC-CGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 140111 | 0.66 | 0.899886 |
Target: 5'- cCCGCCuccucCAUCA-GCgGCcgCGGCgGCg -3' miRNA: 3'- -GGCGGuc---GUAGUgCG-CGuaGCCGgCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 70074 | 0.66 | 0.899886 |
Target: 5'- -gGCCAGCAcgUACaGCGgGUUG-CCGCa -3' miRNA: 3'- ggCGGUCGUa-GUG-CGCgUAGCcGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 194795 | 0.66 | 0.899886 |
Target: 5'- gCCGCCauguGGCccuUCACgGUGCugcUGGCCGUu -3' miRNA: 3'- -GGCGG----UCGu--AGUG-CGCGua-GCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 130481 | 0.66 | 0.899886 |
Target: 5'- -gGcCCAGCuacacCGCGaGCG-CGGCCGCg -3' miRNA: 3'- ggC-GGUCGua---GUGCgCGUaGCCGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 233084 | 0.66 | 0.899886 |
Target: 5'- gCCGCC-GCcUC-CGcCGC-UCGcGCCGCc -3' miRNA: 3'- -GGCGGuCGuAGuGC-GCGuAGC-CGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 132104 | 0.66 | 0.899886 |
Target: 5'- aUCGCCuAGUAUUugagGCgGCGCAgcgCGGCCu- -3' miRNA: 3'- -GGCGG-UCGUAG----UG-CGCGUa--GCCGGcg -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 206871 | 0.66 | 0.899886 |
Target: 5'- uCCGCucCAGCugcUCGcCGCGCA-CG-CCGCa -3' miRNA: 3'- -GGCG--GUCGu--AGU-GCGCGUaGCcGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 221905 | 0.66 | 0.899886 |
Target: 5'- uUGCCGGCG-CGCgGCGCcacccuUCGgggcuGCCGCg -3' miRNA: 3'- gGCGGUCGUaGUG-CGCGu-----AGC-----CGGCG- -5' |
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14035 | 5' | -59.1 | NC_003521.1 | + | 98510 | 0.66 | 0.899886 |
Target: 5'- aC-CCAGUugcgacgaCGCGCGCGgcUgGGCCGCu -3' miRNA: 3'- gGcGGUCGua------GUGCGCGU--AgCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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