miRNA display CGI


Results 1 - 20 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 139090 0.65 0.905244
Target:  5'- cCUGCCGGCcuuccccAUCucgcccccgcCGCGCAUCGuGCUGa -3'
miRNA:   3'- -GGCGGUCG-------UAGu---------GCGCGUAGC-CGGCg -5'
14035 5' -59.1 NC_003521.1 + 108946 0.65 0.904657
Target:  5'- gCUGCCcGa--CACGCGCGgcacgauggccgUGGCCGCc -3'
miRNA:   3'- -GGCGGuCguaGUGCGCGUa-----------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 149280 0.65 0.904068
Target:  5'- gCGUCGGCGcccacaagUACGUGCuggagcgcgacgacgCGGCCGCc -3'
miRNA:   3'- gGCGGUCGUa-------GUGCGCGua-------------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 130481 0.66 0.899886
Target:  5'- -gGcCCAGCuacacCGCGaGCG-CGGCCGCg -3'
miRNA:   3'- ggC-GGUCGua---GUGCgCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 194795 0.66 0.899886
Target:  5'- gCCGCCauguGGCccuUCACgGUGCugcUGGCCGUu -3'
miRNA:   3'- -GGCGG----UCGu--AGUG-CGCGua-GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 9844 0.66 0.899886
Target:  5'- cCCGCUGGCGUCAUGauaGCAcccuUCGaGCUcccgagGCa -3'
miRNA:   3'- -GGCGGUCGUAGUGCg--CGU----AGC-CGG------CG- -5'
14035 5' -59.1 NC_003521.1 + 28568 0.66 0.899886
Target:  5'- aCCGCCGGCcaccgacUACGCGgAcggCGgGCUGCu -3'
miRNA:   3'- -GGCGGUCGua-----GUGCGCgUa--GC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 130264 0.66 0.899886
Target:  5'- cCCGUacguGgAUCACccggaacagGUGCAUCGGcCCGCc -3'
miRNA:   3'- -GGCGgu--CgUAGUG---------CGCGUAGCC-GGCG- -5'
14035 5' -59.1 NC_003521.1 + 95466 0.66 0.899886
Target:  5'- gCGCCcguGCAUCACGUgGCAcUCGaCCaGCg -3'
miRNA:   3'- gGCGGu--CGUAGUGCG-CGU-AGCcGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 95225 0.66 0.899886
Target:  5'- aCUGCagCAGCGaggcCACGgccgcCGCGUCGuGCCGCc -3'
miRNA:   3'- -GGCG--GUCGUa---GUGC-----GCGUAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 140111 0.66 0.899886
Target:  5'- cCCGCCuccucCAUCA-GCgGCcgCGGCgGCg -3'
miRNA:   3'- -GGCGGuc---GUAGUgCG-CGuaGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 40340 0.66 0.899886
Target:  5'- gCCGCCAGUuuggccaggAUCACggcgcuGCGCAg-GGCCu- -3'
miRNA:   3'- -GGCGGUCG---------UAGUG------CGCGUagCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 98510 0.66 0.899886
Target:  5'- aC-CCAGUugcgacgaCGCGCGCGgcUgGGCCGCu -3'
miRNA:   3'- gGcGGUCGua------GUGCGCGU--AgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 53398 0.66 0.899886
Target:  5'- uCUG-CAGCuccUUGCGgGCGUCGGgCGCc -3'
miRNA:   3'- -GGCgGUCGu--AGUGCgCGUAGCCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 233084 0.66 0.899886
Target:  5'- gCCGCC-GCcUC-CGcCGC-UCGcGCCGCc -3'
miRNA:   3'- -GGCGGuCGuAGuGC-GCGuAGC-CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 221905 0.66 0.899886
Target:  5'- uUGCCGGCG-CGCgGCGCcacccuUCGgggcuGCCGCg -3'
miRNA:   3'- gGCGGUCGUaGUG-CGCGu-----AGC-----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 132104 0.66 0.899886
Target:  5'- aUCGCCuAGUAUUugagGCgGCGCAgcgCGGCCu- -3'
miRNA:   3'- -GGCGG-UCGUAG----UG-CGCGUa--GCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 146151 0.66 0.899886
Target:  5'- uCCGCgAGCG-CGaggagaGCGagGUgGGCCGCg -3'
miRNA:   3'- -GGCGgUCGUaGUg-----CGCg-UAgCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 206871 0.66 0.899886
Target:  5'- uCCGCucCAGCugcUCGcCGCGCA-CG-CCGCa -3'
miRNA:   3'- -GGCG--GUCGu--AGU-GCGCGUaGCcGGCG- -5'
14035 5' -59.1 NC_003521.1 + 131872 0.66 0.899886
Target:  5'- aCgGCCAuCGUgcCGCGCGUGUCGGgCaGCg -3'
miRNA:   3'- -GgCGGUcGUA--GUGCGCGUAGCCgG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.