miRNA display CGI


Results 1 - 20 of 655 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 163852 1.13 0.001442
Target:  5'- gCCGCCAGCAUCACGCGCAUCGGCCGCg -3'
miRNA:   3'- -GGCGGUCGUAGUGCGCGUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 186399 0.75 0.427553
Target:  5'- aCCGCgucagcuuccaCGGCGUCAagaacaUGCGCAUCGGCgUGCa -3'
miRNA:   3'- -GGCG-----------GUCGUAGU------GCGCGUAGCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 113020 0.74 0.46183
Target:  5'- gCGCCuGGCAgaucauggagCACGUGCGgcuaCGGCCGCc -3'
miRNA:   3'- gGCGG-UCGUa---------GUGCGCGUa---GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 139090 0.65 0.905244
Target:  5'- cCUGCCGGCcuuccccAUCucgcccccgcCGCGCAUCGuGCUGa -3'
miRNA:   3'- -GGCGGUCG-------UAGu---------GCGCGUAGC-CGGCg -5'
14035 5' -59.1 NC_003521.1 + 119645 0.77 0.341606
Target:  5'- aCGCCAGUAcgACGCGC--UGGCCGCc -3'
miRNA:   3'- gGCGGUCGUagUGCGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 84210 0.76 0.379084
Target:  5'- gUCGCgCAGCAcCAgGCGCGagaGGCCGCg -3'
miRNA:   3'- -GGCG-GUCGUaGUgCGCGUag-CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 110451 0.76 0.379084
Target:  5'- aUCGCCGGUGgcgcugaGCGCGCAcggcgccugCGGCCGCa -3'
miRNA:   3'- -GGCGGUCGUag-----UGCGCGUa--------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 111101 0.76 0.379084
Target:  5'- gCGCuCGGCGUCgACGgGCcgCGGCCGg -3'
miRNA:   3'- gGCG-GUCGUAG-UGCgCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 123936 0.76 0.386903
Target:  5'- cCCGCCGGCG-CGC-CGCcgCaGCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUGcGCGuaGcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 166221 0.75 0.402857
Target:  5'- gCGgCGGCGagGCGCGC--CGGCCGCg -3'
miRNA:   3'- gGCgGUCGUagUGCGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 182421 0.75 0.394828
Target:  5'- aCCGCC-GCAUCACGCGgCcgCGGCa-- -3'
miRNA:   3'- -GGCGGuCGUAGUGCGC-GuaGCCGgcg -5'
14035 5' -59.1 NC_003521.1 + 102802 0.76 0.386903
Target:  5'- gCGCCGGCAgcgacgCACGCGCAccUCGacGCCGa -3'
miRNA:   3'- gGCGGUCGUa-----GUGCGCGU--AGC--CGGCg -5'
14035 5' -59.1 NC_003521.1 + 87710 0.79 0.262903
Target:  5'- gCCGCCuGCugccGUCGCGCGCGccCGGCgGCg -3'
miRNA:   3'- -GGCGGuCG----UAGUGCGCGUa-GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 212111 0.75 0.394828
Target:  5'- gCGCCAcCAUCugGCGCA-CGGUCGg -3'
miRNA:   3'- gGCGGUcGUAGugCGCGUaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 138042 0.79 0.262903
Target:  5'- gCCGCCGGCgccGUCAuCGCGCAgccgCuGCCGCu -3'
miRNA:   3'- -GGCGGUCG---UAGU-GCGCGUa---GcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 22188 0.76 0.384546
Target:  5'- gCCGCCGGCcgUggccgcuuaccgccGCGCGCuggCGGCCGa -3'
miRNA:   3'- -GGCGGUCGuaG--------------UGCGCGua-GCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 173531 0.75 0.402857
Target:  5'- cUCGUCgGGCGUCAgGCGCAgCGGCUGUc -3'
miRNA:   3'- -GGCGG-UCGUAGUgCGCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 169311 0.75 0.435982
Target:  5'- uCgGCCGGCGUCGgucgcaGCGUcgCGGCCGg -3'
miRNA:   3'- -GgCGGUCGUAGUg-----CGCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 72281 0.78 0.300268
Target:  5'- cCCGCCAGCGcCGcCGcCGCGcUGGCCGCc -3'
miRNA:   3'- -GGCGGUCGUaGU-GC-GCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 169428 0.76 0.379084
Target:  5'- gCCGCCucGC-UCACGCggacgacgGCGUCGGCgGCg -3'
miRNA:   3'- -GGCGGu-CGuAGUGCG--------CGUAGCCGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.