miRNA display CGI


Results 21 - 40 of 655 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 5' -59.1 NC_003521.1 + 106850 0.74 0.470624
Target:  5'- gCgGCCAGCGUC-CGCGCAU-GGaCGCc -3'
miRNA:   3'- -GgCGGUCGUAGuGCGCGUAgCCgGCG- -5'
14035 5' -59.1 NC_003521.1 + 113020 0.74 0.46183
Target:  5'- gCGCCuGGCAgaucauggagCACGUGCGgcuaCGGCCGCc -3'
miRNA:   3'- gGCGG-UCGUa---------GUGCGCGUa---GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 102802 0.76 0.386903
Target:  5'- gCGCCGGCAgcgacgCACGCGCAccUCGacGCCGa -3'
miRNA:   3'- gGCGGUCGUa-----GUGCGCGU--AGC--CGGCg -5'
14035 5' -59.1 NC_003521.1 + 72281 0.78 0.300268
Target:  5'- cCCGCCAGCGcCGcCGcCGCGcUGGCCGCc -3'
miRNA:   3'- -GGCGGUCGUaGU-GC-GCGUaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 171659 0.73 0.515795
Target:  5'- gCgGCgGGCGUCGgGaGCGUCGGCgGCa -3'
miRNA:   3'- -GgCGgUCGUAGUgCgCGUAGCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 148818 0.74 0.492068
Target:  5'- gCCGCCGcgccucgccgcucccGCuccguUCGCGcCGgAUCGGCCGCc -3'
miRNA:   3'- -GGCGGU---------------CGu----AGUGC-GCgUAGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 186399 0.75 0.427553
Target:  5'- aCCGCgucagcuuccaCGGCGUCAagaacaUGCGCAUCGGCgUGCa -3'
miRNA:   3'- -GGCG-----------GUCGUAGU------GCGCGUAGCCG-GCG- -5'
14035 5' -59.1 NC_003521.1 + 138042 0.79 0.262903
Target:  5'- gCCGCCGGCgccGUCAuCGCGCAgccgCuGCCGCu -3'
miRNA:   3'- -GGCGGUCG---UAGU-GCGCGUa---GcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 166714 0.74 0.488463
Target:  5'- gCGCCcaugGGCGUCGCGCagucgcgcaGCAugUCGGCCaGCa -3'
miRNA:   3'- gGCGG----UCGUAGUGCG---------CGU--AGCCGG-CG- -5'
14035 5' -59.1 NC_003521.1 + 87710 0.79 0.262903
Target:  5'- gCCGCCuGCugccGUCGCGCGCGccCGGCgGCg -3'
miRNA:   3'- -GGCGGuCG----UAGUGCGCGUa-GCCGgCG- -5'
14035 5' -59.1 NC_003521.1 + 169311 0.75 0.435982
Target:  5'- uCgGCCGGCGUCGgucgcaGCGUcgCGGCCGg -3'
miRNA:   3'- -GgCGGUCGUAGUg-----CGCGuaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 89516 0.74 0.470624
Target:  5'- cCCGCCuGGCcgCcuuGCGCGCGUCggaacccaGGCUGCg -3'
miRNA:   3'- -GGCGG-UCGuaG---UGCGCGUAG--------CCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 212111 0.75 0.394828
Target:  5'- gCGCCAcCAUCugGCGCA-CGGUCGg -3'
miRNA:   3'- gGCGGUcGUAGugCGCGUaGCCGGCg -5'
14035 5' -59.1 NC_003521.1 + 123936 0.76 0.386903
Target:  5'- cCCGCCGGCG-CGC-CGCcgCaGCCGCg -3'
miRNA:   3'- -GGCGGUCGUaGUGcGCGuaGcCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 110451 0.76 0.379084
Target:  5'- aUCGCCGGUGgcgcugaGCGCGCAcggcgccugCGGCCGCa -3'
miRNA:   3'- -GGCGGUCGUag-----UGCGCGUa--------GCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 119645 0.77 0.341606
Target:  5'- aCGCCAGUAcgACGCGC--UGGCCGCc -3'
miRNA:   3'- gGCGGUCGUagUGCGCGuaGCCGGCG- -5'
14035 5' -59.1 NC_003521.1 + 182785 0.73 0.525044
Target:  5'- gCCGCCAGCAgcaaCACGCGCG-CGcccucGUCGUc -3'
miRNA:   3'- -GGCGGUCGUa---GUGCGCGUaGC-----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 197730 0.73 0.515795
Target:  5'- -gGUCAGCucGUCGCGCGCGUaGGCCa- -3'
miRNA:   3'- ggCGGUCG--UAGUGCGCGUAgCCGGcg -5'
14035 5' -59.1 NC_003521.1 + 140707 0.73 0.497501
Target:  5'- aCCGCCAGCcgCGgGuCGCAUCcugcuGUCGCa -3'
miRNA:   3'- -GGCGGUCGuaGUgC-GCGUAGc----CGGCG- -5'
14035 5' -59.1 NC_003521.1 + 16006 0.73 0.494781
Target:  5'- aCCGCCAGCcgCagacgcccuacgccACGCGCGUC--CCGCa -3'
miRNA:   3'- -GGCGGUCGuaG--------------UGCGCGUAGccGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.