miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 3' -54.9 NC_003521.1 + 162287 1.09 0.006248
Target:  5'- gACACAGUCUCAUCACGGGAACGGGGAg -3'
miRNA:   3'- -UGUGUCAGAGUAGUGCCCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 149683 0.67 0.96379
Target:  5'- cCACGGUaacugaucgcgagUAUUACGGGAugcCGGGGAa -3'
miRNA:   3'- uGUGUCAga-----------GUAGUGCCCUu--GCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 105294 0.68 0.943108
Target:  5'- aGCGCG--UUCAUgGCGGGcgUGGGGAc -3'
miRNA:   3'- -UGUGUcaGAGUAgUGCCCuuGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 71246 0.68 0.943108
Target:  5'- -uGCAGUauuagcaaCGUgACGGaGAACGGGGAg -3'
miRNA:   3'- ugUGUCAga------GUAgUGCC-CUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 155631 0.69 0.894187
Target:  5'- gACGCAGUgUCGUaCGCGaccgagcaaGGGACGGGcGAu -3'
miRNA:   3'- -UGUGUCAgAGUA-GUGC---------CCUUGCCC-CU- -5'
14038 3' -54.9 NC_003521.1 + 177161 0.7 0.86672
Target:  5'- cACACGaagCUCugguUCACGGGcACGGGGu -3'
miRNA:   3'- -UGUGUca-GAGu---AGUGCCCuUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 34273 0.66 0.976694
Target:  5'- cUAUcGUCcUGUCACGGGGGCGGGc- -3'
miRNA:   3'- uGUGuCAGaGUAGUGCCCUUGCCCcu -5'
14038 3' -54.9 NC_003521.1 + 236125 0.67 0.951504
Target:  5'- -gACuGUUUCGggACGGGA-CGGGGGg -3'
miRNA:   3'- ugUGuCAGAGUagUGCCCUuGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 13472 0.69 0.918184
Target:  5'- aGCGCcGUCgacgGUCugGGcGACGGGGAa -3'
miRNA:   3'- -UGUGuCAGag--UAGugCCcUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 139246 0.76 0.561296
Target:  5'- gUACGGggCUCcUCGCGcGGAGCGGGGGg -3'
miRNA:   3'- uGUGUCa-GAGuAGUGC-CCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 24033 0.78 0.448527
Target:  5'- gACGCGG-CUCcuggcgugAUCACGGGAGgGGGGAa -3'
miRNA:   3'- -UGUGUCaGAG--------UAGUGCCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 69729 0.66 0.976694
Target:  5'- uACGCGGUa-----ACGGcGGGCGGGGAg -3'
miRNA:   3'- -UGUGUCAgaguagUGCC-CUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 193164 0.76 0.551523
Target:  5'- cGCACAGcaUCUCAggagCcgGCGGGAGCGGcGGAg -3'
miRNA:   3'- -UGUGUC--AGAGUa---G--UGCCCUUGCC-CCU- -5'
14038 3' -54.9 NC_003521.1 + 43215 0.68 0.947417
Target:  5'- uUACuGUCacgCGUUAcCGGGcAGCGGGGAa -3'
miRNA:   3'- uGUGuCAGa--GUAGU-GCCC-UUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 178914 0.66 0.971581
Target:  5'- -aGCGGUCaccCAUCACgucgGGGAACGGcGGc -3'
miRNA:   3'- ugUGUCAGa--GUAGUG----CCCUUGCC-CCu -5'
14038 3' -54.9 NC_003521.1 + 138179 0.67 0.962471
Target:  5'- cGCGCcucuGUCUCGauggcCugGGGcAACGGGGu -3'
miRNA:   3'- -UGUGu---CAGAGUa----GugCCC-UUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 27853 0.67 0.962471
Target:  5'- cCGCGGUCUCGUaACGGc-ACGGaGGAc -3'
miRNA:   3'- uGUGUCAGAGUAgUGCCcuUGCC-CCU- -5'
14038 3' -54.9 NC_003521.1 + 10453 0.67 0.962471
Target:  5'- gGCACGugcGUUUUcgaacuCGGGGACGGGGAu -3'
miRNA:   3'- -UGUGU---CAGAGuagu--GCCCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 235825 0.67 0.953078
Target:  5'- aGCGCGucagcGUCUgA-CGCGGGAuggugaggacaccacACGGGGAg -3'
miRNA:   3'- -UGUGU-----CAGAgUaGUGCCCU---------------UGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 138648 0.69 0.918184
Target:  5'- aACGC-GUCgUCAUCAaGGGAgACGGGGc -3'
miRNA:   3'- -UGUGuCAG-AGUAGUgCCCU-UGCCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.