miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14050 5' -52.3 NC_003521.1 + 190286 0.66 0.995104
Target:  5'- cGCCuGCGAuaCUGCcGCGAacccCGCGGCCc -3'
miRNA:   3'- -UGGuCGCU--GAUGuUGCUa---GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 80533 0.66 0.996382
Target:  5'- -gCAGCGACgacgagUACGACGAcgACGGCUa -3'
miRNA:   3'- ugGUCGCUG------AUGUUGCUagUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 196331 0.66 0.995104
Target:  5'- -aCGGCGGCUGCAGCucGAUuuccagCGCGugCa -3'
miRNA:   3'- ugGUCGCUGAUGUUG--CUA------GUGCugGa -5'
14050 5' -52.3 NC_003521.1 + 118279 0.66 0.995104
Target:  5'- cACCAGCGGCgguaGCAGCag-CACuACCa -3'
miRNA:   3'- -UGGUCGCUGa---UGUUGcuaGUGcUGGa -5'
14050 5' -52.3 NC_003521.1 + 193515 0.66 0.994339
Target:  5'- cGCaCAGCGGCUgagACGACGgAUCGgacgGACCUu -3'
miRNA:   3'- -UG-GUCGCUGA---UGUUGC-UAGUg---CUGGA- -5'
14050 5' -52.3 NC_003521.1 + 211346 0.66 0.993481
Target:  5'- cAUCAGCGugUACugaAACGAcuUCACGAa-- -3'
miRNA:   3'- -UGGUCGCugAUG---UUGCU--AGUGCUgga -5'
14050 5' -52.3 NC_003521.1 + 149740 0.66 0.994339
Target:  5'- gACgAGUGGCaggucuucUGCGGCGAggGCGGCCg -3'
miRNA:   3'- -UGgUCGCUG--------AUGUUGCUagUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 223660 0.66 0.994339
Target:  5'- uGCCAGCG-CUGCGccuCGGccUCGCG-CCg -3'
miRNA:   3'- -UGGUCGCuGAUGUu--GCU--AGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 16851 0.66 0.995104
Target:  5'- cGCCGGCGcaggcggacguCUACGACGugcguucccCGCGGCCg -3'
miRNA:   3'- -UGGUCGCu----------GAUGUUGCua-------GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 38253 0.66 0.993481
Target:  5'- cGCCGGUGAUcuCAGCGGagACGACg- -3'
miRNA:   3'- -UGGUCGCUGauGUUGCUagUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 78151 0.66 0.995104
Target:  5'- -gCGGCGGCcGCgAACGAggCACGAuCCUg -3'
miRNA:   3'- ugGUCGCUGaUG-UUGCUa-GUGCU-GGA- -5'
14050 5' -52.3 NC_003521.1 + 187489 0.66 0.994339
Target:  5'- cGCCGGCGugguggucACGACGAUC-CGACg- -3'
miRNA:   3'- -UGGUCGCuga-----UGUUGCUAGuGCUGga -5'
14050 5' -52.3 NC_003521.1 + 117055 0.66 0.994339
Target:  5'- cGCCcgaGGCGGCcGCGgagccgGCGGUCACG-CCg -3'
miRNA:   3'- -UGG---UCGCUGaUGU------UGCUAGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 18729 0.66 0.993481
Target:  5'- cGCUGGCGGCggcgaucgugGCGGCGGUgGCG-CCg -3'
miRNA:   3'- -UGGUCGCUGa---------UGUUGCUAgUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 137285 0.66 0.994339
Target:  5'- cCCAGCGACcuggaGCuGCGGguggCGCGGCUg -3'
miRNA:   3'- uGGUCGCUGa----UGuUGCUa---GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 149194 0.66 0.993481
Target:  5'- cACCGGCGGCcACGAgGAcUACG-CCa -3'
miRNA:   3'- -UGGUCGCUGaUGUUgCUaGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 116886 0.66 0.993481
Target:  5'- ---cGCGGCUGCGGCGG-CGCG-CCg -3'
miRNA:   3'- ugguCGCUGAUGUUGCUaGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 34481 0.66 0.994339
Target:  5'- gGCCAGCaGCUcgcggaagcagaGCAGCGAgcgcagguaGCGGCCg -3'
miRNA:   3'- -UGGUCGcUGA------------UGUUGCUag-------UGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 118093 0.66 0.995104
Target:  5'- cUCGGCGGCgccguCGcccACGAcCACGACCg -3'
miRNA:   3'- uGGUCGCUGau---GU---UGCUaGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 164445 0.66 0.994339
Target:  5'- cGCCAccGCGGCcGCGGCcGUCACGgucGCCg -3'
miRNA:   3'- -UGGU--CGCUGaUGUUGcUAGUGC---UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.