miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14050 5' -52.3 NC_003521.1 + 54499 0.71 0.919617
Target:  5'- gGCCGGCGGCccgGCGugGAcCAgGAUCUg -3'
miRNA:   3'- -UGGUCGCUGa--UGUugCUaGUgCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 218429 0.72 0.880415
Target:  5'- gGCCAGCGACaGCGGCGGcaccacggaggaCAUGGCCg -3'
miRNA:   3'- -UGGUCGCUGaUGUUGCUa-----------GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 153635 0.72 0.90175
Target:  5'- cGCCAGCGGgUGCGucucgguggaGCGcugCACGGCCg -3'
miRNA:   3'- -UGGUCGCUgAUGU----------UGCua-GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 77411 0.72 0.907939
Target:  5'- -gCAGCGGCagccgACGACGGggcCACGGCCg -3'
miRNA:   3'- ugGUCGCUGa----UGUUGCUa--GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 127330 0.71 0.913895
Target:  5'- gUCAGCGGCUGCcgguCGGcCACGAUCUg -3'
miRNA:   3'- uGGUCGCUGAUGuu--GCUaGUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 43596 0.71 0.913895
Target:  5'- -gCGGCGACgaggACGACGAgCGCGACg- -3'
miRNA:   3'- ugGUCGCUGa---UGUUGCUaGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 36001 0.71 0.919617
Target:  5'- gUCAGCGACgGCGACGGaggUgGCGGCCc -3'
miRNA:   3'- uGGUCGCUGaUGUUGCU---AgUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 102776 0.71 0.919617
Target:  5'- -gCAGCGGCUGC-GCGAUgACGcGCCg -3'
miRNA:   3'- ugGUCGCUGAUGuUGCUAgUGC-UGGa -5'
14050 5' -52.3 NC_003521.1 + 131882 0.71 0.919617
Target:  5'- uGCCGcGCGugUcggGCAGCGAUCugGagGCCa -3'
miRNA:   3'- -UGGU-CGCugA---UGUUGCUAGugC--UGGa -5'
14050 5' -52.3 NC_003521.1 + 55743 0.73 0.859911
Target:  5'- cCCAGCGcGCgggcgGCAGCGAcaggCGCGGCCg -3'
miRNA:   3'- uGGUCGC-UGa----UGUUGCUa---GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 239384 0.73 0.844284
Target:  5'- cACCGGCGGC-GCAGC--UCGCGGCCc -3'
miRNA:   3'- -UGGUCGCUGaUGUUGcuAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 99624 0.73 0.844284
Target:  5'- cCCGGCGGC-GCAGCGc-CACGGCCa -3'
miRNA:   3'- uGGUCGCUGaUGUUGCuaGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 154727 0.79 0.575709
Target:  5'- uCCAGCGGCUGCAgaucaACGAUCugcUGGCCUa -3'
miRNA:   3'- uGGUCGCUGAUGU-----UGCUAGu--GCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 163746 0.78 0.595899
Target:  5'- cGCCGGCGGCaACAGCGGcgcUCACGGCg- -3'
miRNA:   3'- -UGGUCGCUGaUGUUGCU---AGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 13975 0.78 0.626364
Target:  5'- cGCCcGUGACUACGACGAggACGACUa -3'
miRNA:   3'- -UGGuCGCUGAUGUUGCUagUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 145897 0.75 0.783984
Target:  5'- cGCCGGCGGCgggagcaGCGGCGGUUcgcaaACGGCCUu -3'
miRNA:   3'- -UGGUCGCUGa------UGUUGCUAG-----UGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 164698 0.74 0.79307
Target:  5'- gGCCGGCGGCUgacgaagaagACGACGcggUGCGGCCUa -3'
miRNA:   3'- -UGGUCGCUGA----------UGUUGCua-GUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 146886 0.74 0.801124
Target:  5'- aGCCAGaCGACggcggGCAGCGGUagucgccgcuugcCGCGACCa -3'
miRNA:   3'- -UGGUC-GCUGa----UGUUGCUA-------------GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 66370 0.74 0.819433
Target:  5'- gGCCGGCGGCgaGCAGCGAcaccagCGCGugCg -3'
miRNA:   3'- -UGGUCGCUGa-UGUUGCUa-----GUGCugGa -5'
14050 5' -52.3 NC_003521.1 + 215659 0.73 0.836181
Target:  5'- -gCGGCGGgaGCAGCGAaagCGCGACCa -3'
miRNA:   3'- ugGUCGCUgaUGUUGCUa--GUGCUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.