miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14050 5' -52.3 NC_003521.1 + 72 0.69 0.975593
Target:  5'- -gCGGCGGCgUGCGGCGggC-CGGCCg -3'
miRNA:   3'- ugGUCGCUG-AUGUUGCuaGuGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 5527 0.68 0.982298
Target:  5'- -gCAGCGACggugacgGCAGCcggCGCGGCCg -3'
miRNA:   3'- ugGUCGCUGa------UGUUGcuaGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 6055 0.68 0.985927
Target:  5'- cCCAGCGGCcccGCAGggcgUGAUCACG-CCa -3'
miRNA:   3'- uGGUCGCUGa--UGUU----GCUAGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 6521 0.66 0.994339
Target:  5'- cACCGGUGACgAgGGCGGUCuGCGuCCc -3'
miRNA:   3'- -UGGUCGCUGaUgUUGCUAG-UGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 6980 0.68 0.9819
Target:  5'- gACCGGCGACgACGAUaauggaacgguagaaGAUCcuuuccuggcuuaccGCGACCUa -3'
miRNA:   3'- -UGGUCGCUGaUGUUG---------------CUAG---------------UGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 12120 0.68 0.984191
Target:  5'- gAUCuGCGAcCUGCGGCug-CACGACCa -3'
miRNA:   3'- -UGGuCGCU-GAUGUUGcuaGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 12834 0.72 0.907939
Target:  5'- -gCAGCaGCU-CAACGAUCACGugCg -3'
miRNA:   3'- ugGUCGcUGAuGUUGCUAGUGCugGa -5'
14050 5' -52.3 NC_003521.1 + 13458 0.67 0.990016
Target:  5'- aGCgCAGCGGCgguagcgccguCGACGGUCugGGCg- -3'
miRNA:   3'- -UG-GUCGCUGau---------GUUGCUAGugCUGga -5'
14050 5' -52.3 NC_003521.1 + 13975 0.78 0.626364
Target:  5'- cGCCcGUGACUACGACGAggACGACUa -3'
miRNA:   3'- -UGGuCGCUGAUGUUGCUagUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 14391 0.69 0.960577
Target:  5'- aGCUGGCGcGCUACGGCGuGUCGCGcucggagaucGCCUa -3'
miRNA:   3'- -UGGUCGC-UGAUGUUGC-UAGUGC----------UGGA- -5'
14050 5' -52.3 NC_003521.1 + 15333 0.7 0.953085
Target:  5'- gAUCAGCGcGCUgguGCAGCaGUCGCGACUg -3'
miRNA:   3'- -UGGUCGC-UGA---UGUUGcUAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 16851 0.66 0.995104
Target:  5'- cGCCGGCGcaggcggacguCUACGACGugcguucccCGCGGCCg -3'
miRNA:   3'- -UGGUCGCu----------GAUGUUGCua-------GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 17940 0.67 0.991453
Target:  5'- aGCCAGCGACcuCAA-GGUCuucgccagaACGGCCUg -3'
miRNA:   3'- -UGGUCGCUGauGUUgCUAG---------UGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 18729 0.66 0.993481
Target:  5'- cGCUGGCGGCggcgaucgugGCGGCGGUgGCG-CCg -3'
miRNA:   3'- -UGGUCGCUGa---------UGUUGCUAgUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 22894 0.68 0.98364
Target:  5'- cACCuGUGGCUGCAGCaGUacgccaaggaccacCACGGCCa -3'
miRNA:   3'- -UGGuCGCUGAUGUUGcUA--------------GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 26558 0.67 0.991453
Target:  5'- uGCCAGCGACgGCGucaggGCGAUUGUGACa- -3'
miRNA:   3'- -UGGUCGCUGaUGU-----UGCUAGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 28145 0.67 0.990268
Target:  5'- uGCCcuGGCGACgGCGGCGAcCAUGcCCg -3'
miRNA:   3'- -UGG--UCGCUGaUGUUGCUaGUGCuGGa -5'
14050 5' -52.3 NC_003521.1 + 28309 0.69 0.967198
Target:  5'- -gCAGCGGCaGCGACcccggCGCGGCCUg -3'
miRNA:   3'- ugGUCGCUGaUGUUGcua--GUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 28909 0.66 0.995782
Target:  5'- cGCUGcGCGACUACAACGugcucuUCucuAUGGCCa -3'
miRNA:   3'- -UGGU-CGCUGAUGUUGCu-----AG---UGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 29425 0.67 0.988957
Target:  5'- cGCCGGCuGCUGC-ACGAgagccggcgccUgACGGCCUa -3'
miRNA:   3'- -UGGUCGcUGAUGuUGCU-----------AgUGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.