miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14050 5' -52.3 NC_003521.1 + 154367 1.07 0.013821
Target:  5'- cACCAGCGACUACAACGAUCACGACCUc -3'
miRNA:   3'- -UGGUCGCUGAUGUUGCUAGUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 117977 0.8 0.506603
Target:  5'- cACCAGCG-CUACGACGAgcugCGCGACg- -3'
miRNA:   3'- -UGGUCGCuGAUGUUGCUa---GUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 73067 0.8 0.526032
Target:  5'- cACCAGCG-CcACGACGAuugUCACGACCg -3'
miRNA:   3'- -UGGUCGCuGaUGUUGCU---AGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 154727 0.79 0.575709
Target:  5'- uCCAGCGGCUGCAgaucaACGAUCugcUGGCCUa -3'
miRNA:   3'- uGGUCGCUGAUGU-----UGCUAGu--GCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 135242 0.78 0.585787
Target:  5'- cGCCGGCGGCgGCGACGA-CACGGCg- -3'
miRNA:   3'- -UGGUCGCUGaUGUUGCUaGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 163746 0.78 0.595899
Target:  5'- cGCCGGCGGCaACAGCGGcgcUCACGGCg- -3'
miRNA:   3'- -UGGUCGCUGaUGUUGCU---AGUGCUGga -5'
14050 5' -52.3 NC_003521.1 + 116071 0.78 0.606037
Target:  5'- aACCAGCGGCUGC--UGAUCAUgGGCCUg -3'
miRNA:   3'- -UGGUCGCUGAUGuuGCUAGUG-CUGGA- -5'
14050 5' -52.3 NC_003521.1 + 75798 0.78 0.616194
Target:  5'- gGCC-GCGAUggaagccGCGGCGAUCGCGGCCUc -3'
miRNA:   3'- -UGGuCGCUGa------UGUUGCUAGUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 13975 0.78 0.626364
Target:  5'- cGCCcGUGACUACGACGAggACGACUa -3'
miRNA:   3'- -UGGuCGCUGAUGUUGCUagUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 140614 0.78 0.636537
Target:  5'- cGCCGGCcuacGAcCUGCAGCGGUaCACGGCCg -3'
miRNA:   3'- -UGGUCG----CU-GAUGUUGCUA-GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 173453 0.77 0.646707
Target:  5'- gGCCAGCGACaucUGCAACGGguacuUCAUGAUCg -3'
miRNA:   3'- -UGGUCGCUG---AUGUUGCU-----AGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 95214 0.76 0.697221
Target:  5'- cACCGgguGCGACUGCAgcaGCGAggcCACGGCCg -3'
miRNA:   3'- -UGGU---CGCUGAUGU---UGCUa--GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 169313 0.76 0.726951
Target:  5'- gGCCGGCGuCggucGCAGCG-UCGCGGCCg -3'
miRNA:   3'- -UGGUCGCuGa---UGUUGCuAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 111215 0.75 0.746382
Target:  5'- gGCCGGCGACUcgacuauuAgAGCG-UCGCGGCCg -3'
miRNA:   3'- -UGGUCGCUGA--------UgUUGCuAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 145897 0.75 0.783984
Target:  5'- cGCCGGCGGCgggagcaGCGGCGGUUcgcaaACGGCCUu -3'
miRNA:   3'- -UGGUCGCUGa------UGUUGCUAG-----UGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 164698 0.74 0.79307
Target:  5'- gGCCGGCGGCUgacgaagaagACGACGcggUGCGGCCUa -3'
miRNA:   3'- -UGGUCGCUGA----------UGUUGCua-GUGCUGGA- -5'
14050 5' -52.3 NC_003521.1 + 146886 0.74 0.801124
Target:  5'- aGCCAGaCGACggcggGCAGCGGUagucgccgcuugcCGCGACCa -3'
miRNA:   3'- -UGGUC-GCUGa----UGUUGCUA-------------GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 209042 0.74 0.802012
Target:  5'- gGCCuucuGCGAgUGCGGCGAcuggCGCGACCc -3'
miRNA:   3'- -UGGu---CGCUgAUGUUGCUa---GUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 133516 0.74 0.802012
Target:  5'- uGCCAGCGAuCUcGCAACc-UCACGGCCa -3'
miRNA:   3'- -UGGUCGCU-GA-UGUUGcuAGUGCUGGa -5'
14050 5' -52.3 NC_003521.1 + 123713 0.74 0.810802
Target:  5'- -gCGGCGGCUgaGCGGCGGagGCGGCCUc -3'
miRNA:   3'- ugGUCGCUGA--UGUUGCUagUGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.