miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
14059	3'	-60.1	NC_003521.1	+	239387	0.66	0.867843
	Target:  5'- gUUGCUAGGcGGCGUuCCCUGGUGu- -3' miRNA:   3'- gGACGGUCCcCCGCAuGGGGUCAUcc -5'
14059	3'	-60.1	NC_003521.1	+	135991	0.66	0.853555
	Target:  5'- gCgUGUCGGGGGGCcgcGUcacGCCCguGUucucGGGg -3' miRNA:   3'- -GgACGGUCCCCCG---CA---UGGGguCA----UCC- -5'
14059	3'	-60.1	NC_003521.1	+	23229	0.66	0.838565
	Target:  5'- cCCUGCUGGuccGGGGCGgACCCgGGg--- -3' miRNA:   3'- -GGACGGUC---CCCCGCaUGGGgUCaucc -5'
14059	3'	-60.1	NC_003521.1	+	27506	0.66	0.853555
	Target:  5'- aCUcCaCGGGGGGCGUgcggcccgaggcGCCCaCGGUGGc -3' miRNA:   3'- gGAcG-GUCCCCCGCA------------UGGG-GUCAUCc -5'
14059	3'	-60.1	NC_003521.1	+	124190	0.66	0.838565
	Target:  5'- gCCUGCCGgcuGGGGGUGagcggGCCCUuucuGGc -3' miRNA:   3'- -GGACGGU---CCCCCGCa----UGGGGucauCC- -5'
14059	3'	-60.1	NC_003521.1	+	10497	0.66	0.860789
	Target:  5'- --cGCCggcGGGGauGGCGUGgccCCCCAGgcGGc -3' miRNA:   3'- ggaCGG---UCCC--CCGCAU---GGGGUCauCC- -5'
14059	3'	-60.1	NC_003521.1	+	233443	0.66	0.867843
	Target:  5'- --gGCCGGGcaGGGCGUAacguaCCCAGgagacGGa -3' miRNA:   3'- ggaCGGUCC--CCCGCAUg----GGGUCau---CC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home