miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 240476 0.66 0.873932
Target:  5'- gCGCCgCCUCCGGcagcucacgcuuGGUugGCCGUuugcacgCUGGg -3'
miRNA:   3'- gGCGG-GGAGGCC------------CCA--UGGCAua-----GGCC- -5'
14060 3' -60.5 NC_003521.1 + 234471 0.73 0.525527
Target:  5'- aCCgGCCCCUCUGGGau-CCGgAUCUGGc -3'
miRNA:   3'- -GG-CGGGGAGGCCCcauGGCaUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 223314 0.69 0.729558
Target:  5'- gCGCCgCCgggCCGGGaaccGCCGUGaCCGGc -3'
miRNA:   3'- gGCGG-GGa--GGCCCca--UGGCAUaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 217627 0.66 0.873932
Target:  5'- gCCGCCaUCUCCucggcguggucgGGGGgcaugGCgGgAUCCGGg -3'
miRNA:   3'- -GGCGG-GGAGG------------CCCCa----UGgCaUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 209930 0.66 0.886899
Target:  5'- uUCGUUCC-CCcaGGUACCGUAgacCCGGg -3'
miRNA:   3'- -GGCGGGGaGGccCCAUGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 209548 0.66 0.853845
Target:  5'- aUGCgCCCggCGGGGUGgCGgcgacgguggcggggGUCCGGg -3'
miRNA:   3'- gGCG-GGGagGCCCCAUgGCa--------------UAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 203327 0.66 0.853126
Target:  5'- uCCGCgggCCCgaaaacgCCGGGGggcagACCGcGUCCa- -3'
miRNA:   3'- -GGCG---GGGa------GGCCCCa----UGGCaUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 202418 0.71 0.627455
Target:  5'- aCCGCCCgUUCGGGGaACgGacggCCGGc -3'
miRNA:   3'- -GGCGGGgAGGCCCCaUGgCaua-GGCC- -5'
14060 3' -60.5 NC_003521.1 + 190006 0.67 0.848779
Target:  5'- aCCGCUCCcaccaCCGGGGacaccgcugccaucACCGUcgCCGa -3'
miRNA:   3'- -GGCGGGGa----GGCCCCa-------------UGGCAuaGGCc -5'
14060 3' -60.5 NC_003521.1 + 184348 0.7 0.683655
Target:  5'- aCUGCCUCUUCGGGcGgGCCGUggCgCGGc -3'
miRNA:   3'- -GGCGGGGAGGCCC-CaUGGCAuaG-GCC- -5'
14060 3' -60.5 NC_003521.1 + 179489 0.7 0.674339
Target:  5'- aCGCUCCggcagcgCCGGGGaACaCGUGUCCc- -3'
miRNA:   3'- gGCGGGGa------GGCCCCaUG-GCAUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 174812 0.68 0.765044
Target:  5'- gCGCCCacaCGGGGUucuCCagcagcgacuugGUGUCCGGc -3'
miRNA:   3'- gGCGGGgagGCCCCAu--GG------------CAUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 171949 0.67 0.823051
Target:  5'- cUCGCCCCUCaucacaagaGGuacaGGaACCGUAaCCGGu -3'
miRNA:   3'- -GGCGGGGAGg--------CC----CCaUGGCAUaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 170021 0.67 0.815152
Target:  5'- gCGCCUCUUCGGGccGCUGUgcGUCCa- -3'
miRNA:   3'- gGCGGGGAGGCCCcaUGGCA--UAGGcc -5'
14060 3' -60.5 NC_003521.1 + 166492 0.67 0.815152
Target:  5'- gCGCCauCCagCGGGGcGCCGcGUCCGa -3'
miRNA:   3'- gGCGG--GGagGCCCCaUGGCaUAGGCc -5'
14060 3' -60.5 NC_003521.1 + 164518 0.67 0.815152
Target:  5'- gCCGCCaCCUCCGc--UGCCGgacCCGGa -3'
miRNA:   3'- -GGCGG-GGAGGCcccAUGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 160314 0.68 0.782219
Target:  5'- gCCGCCUCcCCGGGGUcAUCGU-UgUGGu -3'
miRNA:   3'- -GGCGGGGaGGCCCCA-UGGCAuAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 157272 0.69 0.702172
Target:  5'- gUCGCCUUUCCGGGGcaacggcgGCCGcGUaCGGg -3'
miRNA:   3'- -GGCGGGGAGGCCCCa-------UGGCaUAgGCC- -5'
14060 3' -60.5 NC_003521.1 + 153074 0.67 0.830804
Target:  5'- uCCGCCg--CCGGGGc-CCGgg-CCGGg -3'
miRNA:   3'- -GGCGGggaGGCCCCauGGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 152355 0.68 0.756304
Target:  5'- aCGCUgCUCUGGGG--CCGg--CCGGg -3'
miRNA:   3'- gGCGGgGAGGCCCCauGGCauaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.