miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 3' -50.1 NC_003521.1 + 33646 0.66 0.999175
Target:  5'- uGGAGGGGc-GGCCAGcAGaGCgggauccagCGACCGg -3'
miRNA:   3'- -CCUUCCUuuUCGGUUuUC-CG---------GCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 4252 0.66 0.999557
Target:  5'- gGGGAGGAGGA-CgAGAAGGaCGGCgGa -3'
miRNA:   3'- -CCUUCCUUUUcGgUUUUCCgGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 113344 0.66 0.999557
Target:  5'- cGGggGGcuu--CCAGGGGGaCgGGCCGg -3'
miRNA:   3'- -CCuuCCuuuucGGUUUUCC-GgCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 228301 0.66 0.999557
Target:  5'- cGAAGuGGAAAcGCC----GGCCGGCCu -3'
miRNA:   3'- cCUUC-CUUUU-CGGuuuuCCGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 43672 0.66 0.999557
Target:  5'- aGGAgAGGAGGAGCagcagCAGGAGGagaCGACg- -3'
miRNA:   3'- -CCU-UCCUUUUCG-----GUUUUCCg--GCUGgc -5'
14064 3' -50.1 NC_003521.1 + 63756 0.66 0.999379
Target:  5'- aGAGGGAgaAGAGCCAGAAccucuacaaccagcuGGCgGGCa- -3'
miRNA:   3'- cCUUCCU--UUUCGGUUUU---------------CCGgCUGgc -5'
14064 3' -50.1 NC_003521.1 + 168932 0.66 0.999645
Target:  5'- aGGAGGGcgcAGGCa---GGGCCG-CCGc -3'
miRNA:   3'- -CCUUCCuu-UUCGguuuUCCGGCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 219410 0.66 0.999452
Target:  5'- cGAGGccGAGuagcuGCCAGAGGGCCGuauCCc -3'
miRNA:   3'- cCUUC--CUUuu---CGGUUUUCCGGCu--GGc -5'
14064 3' -50.1 NC_003521.1 + 216876 0.66 0.999452
Target:  5'- uGGAGcGGGAcauccAGGCCAuccAGGCC-ACCa -3'
miRNA:   3'- -CCUU-CCUU-----UUCGGUuu-UCCGGcUGGc -5'
14064 3' -50.1 NC_003521.1 + 77658 0.66 0.999326
Target:  5'- uGGAacugccgucGGGAGAcagcaGGCCGGGGGGCaCG-CUGg -3'
miRNA:   3'- -CCU---------UCCUUU-----UCGGUUUUCCG-GCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 169056 0.66 0.999175
Target:  5'- cGGggGGAu--GCgCAAGAgacccuucugcGGCaCGACCa -3'
miRNA:   3'- -CCuuCCUuuuCG-GUUUU-----------CCG-GCUGGc -5'
14064 3' -50.1 NC_003521.1 + 52777 0.66 0.999645
Target:  5'- aGGAuGGAGAuGuCCAGgcGGCgGugCGg -3'
miRNA:   3'- -CCUuCCUUUuC-GGUUuuCCGgCugGC- -5'
14064 3' -50.1 NC_003521.1 + 34089 0.66 0.999645
Target:  5'- aGGGAGGuguGGUCGAuGGGcCCGAUg- -3'
miRNA:   3'- -CCUUCCuuuUCGGUUuUCC-GGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 88659 0.66 0.999452
Target:  5'- aGAGGGcc--GCCAGGucgguGGGCCGGCgGc -3'
miRNA:   3'- cCUUCCuuuuCGGUUU-----UCCGGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 83535 0.66 0.999175
Target:  5'- uGGAgAGGAaaucGAGGCaCAcgGGGCCcACCa -3'
miRNA:   3'- -CCU-UCCU----UUUCG-GUuuUCCGGcUGGc -5'
14064 3' -50.1 NC_003521.1 + 98802 0.66 0.999452
Target:  5'- cGAAGaGGAGGGaCGAGGGuaCGGCCGg -3'
miRNA:   3'- cCUUC-CUUUUCgGUUUUCcgGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 52590 0.66 0.999452
Target:  5'- cGGGcagcuGGu--GGcCCGAAAGGCCGGCa- -3'
miRNA:   3'- -CCUu----CCuuuUC-GGUUUUCCGGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 173999 0.66 0.999175
Target:  5'- gGGAAcGGGAGAGUCGGGGGGagaGAUgGg -3'
miRNA:   3'- -CCUU-CCUUUUCGGUUUUCCgg-CUGgC- -5'
14064 3' -50.1 NC_003521.1 + 109353 0.66 0.999645
Target:  5'- cGGcgcAGGA--GGCCGAcGAGGCCGAg-- -3'
miRNA:   3'- -CCu--UCCUuuUCGGUU-UUCCGGCUggc -5'
14064 3' -50.1 NC_003521.1 + 150528 0.66 0.999557
Target:  5'- aGGAGcGGGAGCCGugGGGuCCGGCgGu -3'
miRNA:   3'- cCUUCcUUUUCGGUuuUCC-GGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.