miRNA display CGI


Results 1 - 20 of 223 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 3' -50.1 NC_003521.1 + 169000 0.72 0.960827
Target:  5'- cGGGAGGc-GGGCgAcgGGGCCGGCaCGa -3'
miRNA:   3'- -CCUUCCuuUUCGgUuuUCCGGCUG-GC- -5'
14064 3' -50.1 NC_003521.1 + 163072 0.74 0.919346
Target:  5'- ---cGuGAAGAGCCAcgccGAGGCCGGCCc -3'
miRNA:   3'- ccuuC-CUUUUCGGUu---UUCCGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 131129 0.74 0.924915
Target:  5'- gGGAAGGGAcAGCgCGAccccucGGCCGAUCGc -3'
miRNA:   3'- -CCUUCCUUuUCG-GUUuu----CCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 129513 0.73 0.935325
Target:  5'- -uAGGGAGGAGCUc-GAGcGCCGACCa -3'
miRNA:   3'- ccUUCCUUUUCGGuuUUC-CGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 129888 0.73 0.935325
Target:  5'- gGGGAGGAGGAGgacgaCGAcGGGgCGGCCGc -3'
miRNA:   3'- -CCUUCCUUUUCg----GUUuUCCgGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 64739 0.73 0.949133
Target:  5'- aGAuGGAcgccguGGCCAAGAcGCCGGCCGg -3'
miRNA:   3'- cCUuCCUuu----UCGGUUUUcCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 81121 0.72 0.953261
Target:  5'- -aGAGGAu-GGCCGAAGGGuuGAUCu -3'
miRNA:   3'- ccUUCCUuuUCGGUUUUCCggCUGGc -5'
14064 3' -50.1 NC_003521.1 + 66315 0.72 0.953261
Target:  5'- cGGAGGuGAuccAAGCCGuGGAGGCCGcCUGg -3'
miRNA:   3'- -CCUUC-CUu--UUCGGU-UUUCCGGCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 160476 0.72 0.960827
Target:  5'- uGGGAGGAGAGGCgAGGAGacggacacaGCaGACCGc -3'
miRNA:   3'- -CCUUCCUUUUCGgUUUUC---------CGgCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 91357 0.74 0.913536
Target:  5'- cGGGAGGAcggugggggagGGGGCCGAAccccGGGCCcgGACCc -3'
miRNA:   3'- -CCUUCCU-----------UUUCGGUUU----UCCGG--CUGGc -5'
14064 3' -50.1 NC_003521.1 + 94575 0.74 0.907484
Target:  5'- cGGcGGGAAAAGCCGGAGGGaaCGGCa- -3'
miRNA:   3'- -CCuUCCUUUUCGGUUUUCCg-GCUGgc -5'
14064 3' -50.1 NC_003521.1 + 216492 0.74 0.907484
Target:  5'- cGAucuGGAAGAG-CAGGAGGCCGACg- -3'
miRNA:   3'- cCUu--CCUUUUCgGUUUUCCGGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 85612 0.78 0.771974
Target:  5'- cGAGGGcgcgaaGAGGGCCGAGAGGUCGugCa -3'
miRNA:   3'- cCUUCC------UUUUCGGUUUUCCGGCugGc -5'
14064 3' -50.1 NC_003521.1 + 101733 0.77 0.781355
Target:  5'- gGGGcgagauGGGGAAGGCCGGcAGGUCGugCGg -3'
miRNA:   3'- -CCU------UCCUUUUCGGUUuUCCGGCugGC- -5'
14064 3' -50.1 NC_003521.1 + 215478 0.77 0.781355
Target:  5'- cGAAGGcGAAGGCCAGGAGcagggacaacguGCCGGCCa -3'
miRNA:   3'- cCUUCC-UUUUCGGUUUUC------------CGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 214470 0.77 0.817431
Target:  5'- uGAAGGAGAggaaGGCCAcguAGAGGCCuaaGACCa -3'
miRNA:   3'- cCUUCCUUU----UCGGU---UUUCCGG---CUGGc -5'
14064 3' -50.1 NC_003521.1 + 196696 0.75 0.894668
Target:  5'- cGGAGGAGGAGCagcGAcGGCCGACUu -3'
miRNA:   3'- cCUUCCUUUUCGgu-UUuCCGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 4306 0.74 0.901194
Target:  5'- aGGcaGAGGGAcGGCC-GGGGGCuCGACCGu -3'
miRNA:   3'- -CC--UUCCUUuUCGGuUUUCCG-GCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 135796 0.74 0.907484
Target:  5'- cGGGAGGAGGAGCagcggcggaGGGAGGCgCGGCg- -3'
miRNA:   3'- -CCUUCCUUUUCGg--------UUUUCCG-GCUGgc -5'
14064 3' -50.1 NC_003521.1 + 174498 0.74 0.907484
Target:  5'- uGGAAGGAcugcAGGGCCGcGAuGGCCGcGCUGg -3'
miRNA:   3'- -CCUUCCU----UUUCGGUuUU-CCGGC-UGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.