miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 3' -50.1 NC_003521.1 + 147132 1.13 0.010315
Target:  5'- gGGAAGGAAAAGCCAAAAGGCCGACCGg -3'
miRNA:   3'- -CCUUCCUUUUCGGUUUUCCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 123734 0.81 0.610994
Target:  5'- cGGAcgcgcgGGGAAcAG-CAGAAGGCCGGCCGg -3'
miRNA:   3'- -CCU------UCCUUuUCgGUUUUCCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 4222 0.8 0.66249
Target:  5'- gGGAAGGGugucGGAGCCccGAGGCUGGCUGc -3'
miRNA:   3'- -CCUUCCU----UUUCGGuuUUCCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 34872 0.79 0.693156
Target:  5'- uGGAAGuGAccgagucgcaguGGAGCCAGAAGGCCGAgaCCu -3'
miRNA:   3'- -CCUUC-CU------------UUUCGGUUUUCCGGCU--GGc -5'
14064 3' -50.1 NC_003521.1 + 37194 0.78 0.749932
Target:  5'- uGGGAGGAGGAGCCGGGGgaccgcgguuaggcGGCCucggggguggaGACCGg -3'
miRNA:   3'- -CCUUCCUUUUCGGUUUU--------------CCGG-----------CUGGC- -5'
14064 3' -50.1 NC_003521.1 + 148637 0.78 0.771028
Target:  5'- gGGGAGGGGAGGCCA--GGGCaucgcccCGACCc -3'
miRNA:   3'- -CCUUCCUUUUCGGUuuUCCG-------GCUGGc -5'
14064 3' -50.1 NC_003521.1 + 85612 0.78 0.771974
Target:  5'- cGAGGGcgcgaaGAGGGCCGAGAGGUCGugCa -3'
miRNA:   3'- cCUUCC------UUUUCGGUUUUCCGGCugGc -5'
14064 3' -50.1 NC_003521.1 + 101733 0.77 0.781355
Target:  5'- gGGGcgagauGGGGAAGGCCGGcAGGUCGugCGg -3'
miRNA:   3'- -CCU------UCCUUUUCGGUUuUCCGGCugGC- -5'
14064 3' -50.1 NC_003521.1 + 215478 0.77 0.781355
Target:  5'- cGAAGGcGAAGGCCAGGAGcagggacaacguGCCGGCCa -3'
miRNA:   3'- cCUUCC-UUUUCGGUUUUC------------CGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 36485 0.77 0.7906
Target:  5'- cGGAGGAcGAcGCUGAGGGGUCGACCa -3'
miRNA:   3'- cCUUCCUuUU-CGGUUUUCCGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 214470 0.77 0.817431
Target:  5'- uGAAGGAGAggaaGGCCAcguAGAGGCCuaaGACCa -3'
miRNA:   3'- cCUUCCUUU----UCGGU---UUUCCGG---CUGGc -5'
14064 3' -50.1 NC_003521.1 + 94297 0.75 0.865524
Target:  5'- cGGAGGGAcccggguGGAGCCGccguuucuGcGGGUCGGCCGa -3'
miRNA:   3'- -CCUUCCU-------UUUCGGU--------UuUCCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 86384 0.75 0.894668
Target:  5'- cGGAAGGGGAagaagGGCCAGc-GGUCGACgCGg -3'
miRNA:   3'- -CCUUCCUUU-----UCGGUUuuCCGGCUG-GC- -5'
14064 3' -50.1 NC_003521.1 + 121045 0.75 0.894668
Target:  5'- cGGAAGGuggaccgcAGCCuGGAGGCCGAgCa -3'
miRNA:   3'- -CCUUCCuuu-----UCGGuUUUCCGGCUgGc -5'
14064 3' -50.1 NC_003521.1 + 196696 0.75 0.894668
Target:  5'- cGGAGGAGGAGCagcGAcGGCCGACUu -3'
miRNA:   3'- cCUUCCUUUUCGgu-UUuCCGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 4306 0.74 0.901194
Target:  5'- aGGcaGAGGGAcGGCC-GGGGGCuCGACCGu -3'
miRNA:   3'- -CC--UUCCUUuUCGGuUUUCCG-GCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 216492 0.74 0.907484
Target:  5'- cGAucuGGAAGAG-CAGGAGGCCGACg- -3'
miRNA:   3'- cCUu--CCUUUUCgGUUUUCCGGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 174498 0.74 0.907484
Target:  5'- uGGAAGGAcugcAGGGCCGcGAuGGCCGcGCUGg -3'
miRNA:   3'- -CCUUCCU----UUUCGGUuUU-CCGGC-UGGC- -5'
14064 3' -50.1 NC_003521.1 + 135796 0.74 0.907484
Target:  5'- cGGGAGGAGGAGCagcggcggaGGGAGGCgCGGCg- -3'
miRNA:   3'- -CCUUCCUUUUCGg--------UUUUCCG-GCUGgc -5'
14064 3' -50.1 NC_003521.1 + 94575 0.74 0.907484
Target:  5'- cGGcGGGAAAAGCCGGAGGGaaCGGCa- -3'
miRNA:   3'- -CCuUCCUUUUCGGUUUUCCg-GCUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.