miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 3' -50.1 NC_003521.1 + 95 0.67 0.998248
Target:  5'- cGGGcgugcAGG-GAGGCCGAAGcggcGGCCGgaGCCGu -3'
miRNA:   3'- -CCU-----UCCuUUUCGGUUUU----CCGGC--UGGC- -5'
14064 3' -50.1 NC_003521.1 + 966 0.69 0.99105
Target:  5'- uGGgcGcaacGAGAGGCCGGcggucugcucccguGGGCCGGCCGu -3'
miRNA:   3'- -CCuuC----CUUUUCGGUUu-------------UCCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 4116 0.71 0.980588
Target:  5'- gGGAAGGAAuaGGGUgGGAuacgggagcGGGCCGGCgGc -3'
miRNA:   3'- -CCUUCCUU--UUCGgUUU---------UCCGGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 4182 0.68 0.995597
Target:  5'- aGGAAGGGGAcaugggAGCCAggugAAAGgaaaggggguuugaaGCCGGCCc -3'
miRNA:   3'- -CCUUCCUUU------UCGGU----UUUC---------------CGGCUGGc -5'
14064 3' -50.1 NC_003521.1 + 4222 0.8 0.66249
Target:  5'- gGGAAGGGugucGGAGCCccGAGGCUGGCUGc -3'
miRNA:   3'- -CCUUCCU----UUUCGGuuUUCCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 4252 0.66 0.999557
Target:  5'- gGGGAGGAGGA-CgAGAAGGaCGGCgGa -3'
miRNA:   3'- -CCUUCCUUUUcGgUUUUCCgGCUGgC- -5'
14064 3' -50.1 NC_003521.1 + 4306 0.74 0.901194
Target:  5'- aGGcaGAGGGAcGGCC-GGGGGCuCGACCGu -3'
miRNA:   3'- -CC--UUCCUUuUCGGuUUUCCG-GCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 5823 0.66 0.999645
Target:  5'- ---cGGA--GGCCAGGGGGaCCGcuACCGc -3'
miRNA:   3'- ccuuCCUuuUCGGUUUUCC-GGC--UGGC- -5'
14064 3' -50.1 NC_003521.1 + 6458 0.66 0.999557
Target:  5'- cGGGAGGAGcggaugacGGCaCGGGAGGCaGGuCCGg -3'
miRNA:   3'- -CCUUCCUUu-------UCG-GUUUUCCGgCU-GGC- -5'
14064 3' -50.1 NC_003521.1 + 10401 0.67 0.998785
Target:  5'- uGAAGGGAAA-CCAGAAGcaGCCGAaaGa -3'
miRNA:   3'- cCUUCCUUUUcGGUUUUC--CGGCUggC- -5'
14064 3' -50.1 NC_003521.1 + 11913 0.66 0.999326
Target:  5'- uGGAGGAGAucgagucccccAGCC---GGGCCcGGCUGg -3'
miRNA:   3'- cCUUCCUUU-----------UCGGuuuUCCGG-CUGGC- -5'
14064 3' -50.1 NC_003521.1 + 13064 0.68 0.997524
Target:  5'- -cGAGGAAGAGaaCCAGAAGcaGCgGACCa -3'
miRNA:   3'- ccUUCCUUUUC--GGUUUUC--CGgCUGGc -5'
14064 3' -50.1 NC_003521.1 + 13099 0.7 0.987837
Target:  5'- aGGggGGAAGcGGCacAGAGGCCGAg-- -3'
miRNA:   3'- -CCuuCCUUU-UCGguUUUCCGGCUggc -5'
14064 3' -50.1 NC_003521.1 + 13203 0.71 0.980588
Target:  5'- ---cGGGcc-GCCGuguugGAGGGCCGACCGg -3'
miRNA:   3'- ccuuCCUuuuCGGU-----UUUCCGGCUGGC- -5'
14064 3' -50.1 NC_003521.1 + 13912 0.73 0.930241
Target:  5'- cGGAGGG---GGCCGcGGAGGCCGcGCUGg -3'
miRNA:   3'- -CCUUCCuuuUCGGU-UUUCCGGC-UGGC- -5'
14064 3' -50.1 NC_003521.1 + 14104 0.68 0.995597
Target:  5'- cGAGGGAcgcugccugugucugGGuccGCCGAAGGGCUGGCaCGu -3'
miRNA:   3'- cCUUCCU---------------UUu--CGGUUUUCCGGCUG-GC- -5'
14064 3' -50.1 NC_003521.1 + 15222 0.67 0.998785
Target:  5'- gGGGcugcAGGc--GGCCGAgcgcGAGGCCG-CCGa -3'
miRNA:   3'- -CCU----UCCuuuUCGGUU----UUCCGGCuGGC- -5'
14064 3' -50.1 NC_003521.1 + 16934 0.69 0.991738
Target:  5'- -cGAGGAAGAGCCuauGGAGcCCGACa- -3'
miRNA:   3'- ccUUCCUUUUCGGu--UUUCcGGCUGgc -5'
14064 3' -50.1 NC_003521.1 + 17732 0.71 0.980372
Target:  5'- cGggGGAGAacccgucGGCCGAGGccggggaacuGGCCGuACCGc -3'
miRNA:   3'- cCuuCCUUU-------UCGGUUUU----------CCGGC-UGGC- -5'
14064 3' -50.1 NC_003521.1 + 19106 0.7 0.987837
Target:  5'- gGGGAGGGAGAcgacGCgGGuggcGGGCCG-CCGg -3'
miRNA:   3'- -CCUUCCUUUU----CGgUUu---UCCGGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.