miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14064 5' -52.7 NC_003521.1 + 105488 0.66 0.993915
Target:  5'- cGCGGGaGGGA----GGCAACCCGcccGACc -3'
miRNA:   3'- cUGUCC-CCUUaaaaCCGUUGGGC---CUG- -5'
14064 5' -52.7 NC_003521.1 + 37206 0.66 0.993915
Target:  5'- -cCGGGGGAccgcggUUaGGCGGCCuCGGGg -3'
miRNA:   3'- cuGUCCCCUua----AAaCCGUUGG-GCCUg -5'
14064 5' -52.7 NC_003521.1 + 137276 0.66 0.993915
Target:  5'- aGCGGGGGcccca--GCGACCUGGAg -3'
miRNA:   3'- cUGUCCCCuuaaaacCGUUGGGCCUg -5'
14064 5' -52.7 NC_003521.1 + 84794 0.66 0.99374
Target:  5'- aGCAGaGGGAGggcacgucgGGCAGCUcgauaCGGGCa -3'
miRNA:   3'- cUGUC-CCCUUaaaa-----CCGUUGG-----GCCUG- -5'
14064 5' -52.7 NC_003521.1 + 73139 0.66 0.99347
Target:  5'- cGGCGGGGGcagcggcggcGGCGccgccucggccugcgACCUGGACg -3'
miRNA:   3'- -CUGUCCCCuuaaaa----CCGU---------------UGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 71280 0.66 0.991977
Target:  5'- aGGCGGGGGccgc--GGCAcggGCCCcugGGGCa -3'
miRNA:   3'- -CUGUCCCCuuaaaaCCGU---UGGG---CCUG- -5'
14064 5' -52.7 NC_003521.1 + 162315 0.66 0.991869
Target:  5'- aGCGGGGGGAUUcccUacuacccgcaggcGGCGACUgCGGGCg -3'
miRNA:   3'- cUGUCCCCUUAAa--A-------------CCGUUGG-GCCUG- -5'
14064 5' -52.7 NC_003521.1 + 155404 0.66 0.99084
Target:  5'- cGGCGGGGGGcug--GGCA--CCGGAg -3'
miRNA:   3'- -CUGUCCCCUuaaaaCCGUugGGCCUg -5'
14064 5' -52.7 NC_003521.1 + 109023 0.66 0.99084
Target:  5'- uGCAGGGGAAg-UUGGUggUCCaGuACa -3'
miRNA:   3'- cUGUCCCCUUaaAACCGuuGGGcC-UG- -5'
14064 5' -52.7 NC_003521.1 + 46030 0.66 0.98958
Target:  5'- cGugGGGaGGAGUgaggGGCGccaugacguugGCaCCGGGCg -3'
miRNA:   3'- -CugUCC-CCUUAaaa-CCGU-----------UG-GGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 46040 0.66 0.98958
Target:  5'- aGugAGGGGcgccAUgacgUUGGCA--CCGGGCg -3'
miRNA:   3'- -CugUCCCCu---UAa---AACCGUugGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 66279 0.66 0.98958
Target:  5'- aGCAGGaGGGAggcggacUGGCGggcacagccgACCCGGAg -3'
miRNA:   3'- cUGUCC-CCUUaaa----ACCGU----------UGGGCCUg -5'
14064 5' -52.7 NC_003521.1 + 188688 0.66 0.98958
Target:  5'- gGGCGGGGGAuacgcgGGU--CCCGuGGCg -3'
miRNA:   3'- -CUGUCCCCUuaaaa-CCGuuGGGC-CUG- -5'
14064 5' -52.7 NC_003521.1 + 5842 0.66 0.98958
Target:  5'- cGACcGGGGcccuUUUauGCGAUCCGGGCg -3'
miRNA:   3'- -CUGuCCCCuu--AAAacCGUUGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 122013 0.67 0.986656
Target:  5'- uGGCAGGGGGu------CGACUCGGGCg -3'
miRNA:   3'- -CUGUCCCCUuaaaaccGUUGGGCCUG- -5'
14064 5' -52.7 NC_003521.1 + 198319 0.67 0.984975
Target:  5'- gGGguGGGGGAUg--GGCGgcuaaACCUGuGACg -3'
miRNA:   3'- -CUguCCCCUUAaaaCCGU-----UGGGC-CUG- -5'
14064 5' -52.7 NC_003521.1 + 32719 0.67 0.984975
Target:  5'- aGGguGGGGggU--UGGCGACgCCaccagcGGGCg -3'
miRNA:   3'- -CUguCCCCuuAaaACCGUUG-GG------CCUG- -5'
14064 5' -52.7 NC_003521.1 + 101012 0.67 0.983139
Target:  5'- gGACAGGGGcgcGUccUGGCGggcacGCCCGuGCa -3'
miRNA:   3'- -CUGUCCCCu--UAaaACCGU-----UGGGCcUG- -5'
14064 5' -52.7 NC_003521.1 + 64841 0.67 0.983139
Target:  5'- aACAGGGGAucuccacGGCGAUCuCGGGu -3'
miRNA:   3'- cUGUCCCCUuaaaa--CCGUUGG-GCCUg -5'
14064 5' -52.7 NC_003521.1 + 18046 0.67 0.981137
Target:  5'- cGugGGGGGAAUggUGG-GACgaGGACc -3'
miRNA:   3'- -CugUCCCCUUAaaACCgUUGggCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.