miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 3' -55.3 NC_003521.1 + 147404 0.66 0.976315
Target:  5'- gGCggaucgCGUGGcgGUGAGGacGaCCACGuUCCg -3'
miRNA:   3'- aUGa-----GCGCCuaCACUCU--C-GGUGC-AGG- -5'
14065 3' -55.3 NC_003521.1 + 108448 0.66 0.976315
Target:  5'- -cCUCGCGGGUGUGcGGcguGCCGCu--- -3'
miRNA:   3'- auGAGCGCCUACAC-UCu--CGGUGcagg -5'
14065 3' -55.3 NC_003521.1 + 215444 0.66 0.974077
Target:  5'- aGC-CGCGGGUGcuggcgccaggccgaGGGAGCCACGa-- -3'
miRNA:   3'- aUGaGCGCCUACa--------------CUCUCGGUGCagg -5'
14065 3' -55.3 NC_003521.1 + 135982 0.66 0.97382
Target:  5'- -uCUCGCccagcGUGUcgGGGGGCCGCGUCa -3'
miRNA:   3'- auGAGCGcc---UACA--CUCUCGGUGCAGg -5'
14065 3' -55.3 NC_003521.1 + 148313 0.66 0.97382
Target:  5'- gACUagcaaGCGGggGUGAGguggcGGaCCACGcCCg -3'
miRNA:   3'- aUGAg----CGCCuaCACUC-----UC-GGUGCaGG- -5'
14065 3' -55.3 NC_003521.1 + 113165 0.66 0.97382
Target:  5'- cUGCUCGCGGccaaGAuGGGCCGCGaggugCCc -3'
miRNA:   3'- -AUGAGCGCCuacaCU-CUCGGUGCa----GG- -5'
14065 3' -55.3 NC_003521.1 + 86191 0.66 0.970861
Target:  5'- gACUCGCGGGccacgGUGgaggcgaAGGGCgGCGgcacgCCg -3'
miRNA:   3'- aUGAGCGCCUa----CAC-------UCUCGgUGCa----GG- -5'
14065 3' -55.3 NC_003521.1 + 115360 0.66 0.968267
Target:  5'- gGCggCGCGGgcGcGuucGCCACGUCCg -3'
miRNA:   3'- aUGa-GCGCCuaCaCucuCGGUGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 218627 0.66 0.965198
Target:  5'- aGCgCGCGGcgGUaAGcGGCCACGgCCg -3'
miRNA:   3'- aUGaGCGCCuaCAcUC-UCGGUGCaGG- -5'
14065 3' -55.3 NC_003521.1 + 198775 0.66 0.965198
Target:  5'- cGCUCGUGGGcgagGUGGGuagcAGCUGCGUggugCCg -3'
miRNA:   3'- aUGAGCGCCUa---CACUC----UCGGUGCA----GG- -5'
14065 3' -55.3 NC_003521.1 + 120303 0.66 0.961926
Target:  5'- cGCUCGgGGG-GUGucuauaaaaAGCCACGUCg -3'
miRNA:   3'- aUGAGCgCCUaCACuc-------UCGGUGCAGg -5'
14065 3' -55.3 NC_003521.1 + 163057 0.66 0.961926
Target:  5'- cUACgUGCGGcacuacGUGaAGAGCCACG-CCg -3'
miRNA:   3'- -AUGaGCGCCua----CAC-UCUCGGUGCaGG- -5'
14065 3' -55.3 NC_003521.1 + 54566 0.66 0.961926
Target:  5'- cGCUugaCGCGGGUGUGc-GGCC-CGaUCCa -3'
miRNA:   3'- aUGA---GCGCCUACACucUCGGuGC-AGG- -5'
14065 3' -55.3 NC_003521.1 + 135625 0.67 0.958803
Target:  5'- aGCUCGCGGGcggaucccacgaucgGcgGGGGGCCcaGCGUCg -3'
miRNA:   3'- aUGAGCGCCUa--------------Ca-CUCUCGG--UGCAGg -5'
14065 3' -55.3 NC_003521.1 + 110771 0.67 0.958446
Target:  5'- gGC-CGCGGAgacGUGcGuGGCCACGUgCCc -3'
miRNA:   3'- aUGaGCGCCUa--CACuC-UCGGUGCA-GG- -5'
14065 3' -55.3 NC_003521.1 + 183385 0.67 0.958446
Target:  5'- cGCUuuUGCGGc-GUGcaGGAGCC-CGUCCg -3'
miRNA:   3'- aUGA--GCGCCuaCAC--UCUCGGuGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 129415 0.67 0.958446
Target:  5'- cGCUUGCaGAaaUGgGGGAGCCgcugcagcGCGUCCc -3'
miRNA:   3'- aUGAGCGcCU--ACaCUCUCGG--------UGCAGG- -5'
14065 3' -55.3 NC_003521.1 + 27412 0.67 0.950847
Target:  5'- cUGCUCGCGGGUGcUGA---CCAgCGUCUu -3'
miRNA:   3'- -AUGAGCGCCUAC-ACUcucGGU-GCAGG- -5'
14065 3' -55.3 NC_003521.1 + 13903 0.67 0.94672
Target:  5'- gGCccggCGCGGA---GGGGGCCGCGgaggCCg -3'
miRNA:   3'- aUGa---GCGCCUacaCUCUCGGUGCa---GG- -5'
14065 3' -55.3 NC_003521.1 + 143354 0.67 0.94672
Target:  5'- gGCUCGCGG--GUGAGaAGCgGCGg-- -3'
miRNA:   3'- aUGAGCGCCuaCACUC-UCGgUGCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.