miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 5' -63.2 NC_003521.1 + 146795 1.07 0.001406
Target:  5'- aAGGCGGGCCCCGGCGAGCUAUGUGCGu -3'
miRNA:   3'- -UCCGCCCGGGGCCGCUCGAUACACGC- -5'
14066 5' -63.2 NC_003521.1 + 197855 0.69 0.535407
Target:  5'- cGGUGGGCgCCGGCGggucgcgcucgcugGGCUGcagGCGg -3'
miRNA:   3'- uCCGCCCGgGGCCGC--------------UCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 40339 0.68 0.547422
Target:  5'- -uGCGGGUCCCGGgGGGUggggggGUGUuuuugGCGg -3'
miRNA:   3'- ucCGCCCGGGGCCgCUCGa-----UACA-----CGC- -5'
14066 5' -63.2 NC_003521.1 + 212710 0.66 0.716155
Target:  5'- uGGGuCGGGCCUCgaucuugGGCGAGCgcc-UGCu -3'
miRNA:   3'- -UCC-GCCCGGGG-------CCGCUCGauacACGc -5'
14066 5' -63.2 NC_003521.1 + 177736 0.72 0.354315
Target:  5'- aGGGCGGGCagcgcgCCGGCGcAGCUGUacgggGUcGCGg -3'
miRNA:   3'- -UCCGCCCGg-----GGCCGC-UCGAUA-----CA-CGC- -5'
14066 5' -63.2 NC_003521.1 + 98259 0.71 0.400011
Target:  5'- cGGCGGGCa-CGGCGAGCc-UG-GCGg -3'
miRNA:   3'- uCCGCCCGggGCCGCUCGauACaCGC- -5'
14066 5' -63.2 NC_003521.1 + 122520 0.7 0.440849
Target:  5'- cGGCGGGCaggCCGGCG-GCggugGUaGUGCu -3'
miRNA:   3'- uCCGCCCGg--GGCCGCuCGa---UA-CACGc -5'
14066 5' -63.2 NC_003521.1 + 36690 0.7 0.449298
Target:  5'- gAGGcCGGGCUCCGGCGccuggcccgAGCagGUGgagGCGc -3'
miRNA:   3'- -UCC-GCCCGGGGCCGC---------UCGa-UACa--CGC- -5'
14066 5' -63.2 NC_003521.1 + 39890 0.7 0.483952
Target:  5'- gGGGUGGGCgugcggucguCCCGGCGGGCgcgaaaGCGc -3'
miRNA:   3'- -UCCGCCCG----------GGGCCGCUCGauaca-CGC- -5'
14066 5' -63.2 NC_003521.1 + 101841 0.69 0.519837
Target:  5'- uGGCGGGCUCCGG---GUUGUGgaugGCGg -3'
miRNA:   3'- uCCGCCCGGGGCCgcuCGAUACa---CGC- -5'
14066 5' -63.2 NC_003521.1 + 198584 0.7 0.483952
Target:  5'- cGGCGGGCUagaCGcCGAGCUGagguugugGUGCGa -3'
miRNA:   3'- uCCGCCCGGg--GCcGCUCGAUa-------CACGC- -5'
14066 5' -63.2 NC_003521.1 + 86697 0.7 0.45441
Target:  5'- uGGCGGGCCgCGGCG-GCgacgacgagGCGg -3'
miRNA:   3'- uCCGCCCGGgGCCGCuCGauaca----CGC- -5'
14066 5' -63.2 NC_003521.1 + 87743 0.74 0.274407
Target:  5'- uGGUGGGCCCCGGCccGGGCcccg-GCGg -3'
miRNA:   3'- uCCGCCCGGGGCCG--CUCGauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 187252 0.69 0.492816
Target:  5'- gAGGC-GGCCCCGGgaGAGCUAgagagacGCGa -3'
miRNA:   3'- -UCCGcCCGGGGCCg-CUCGAUaca----CGC- -5'
14066 5' -63.2 NC_003521.1 + 38230 0.73 0.312428
Target:  5'- aGGGC-GGCCUCGGCGGGCgg-G-GCGg -3'
miRNA:   3'- -UCCGcCCGGGGCCGCUCGauaCaCGC- -5'
14066 5' -63.2 NC_003521.1 + 87091 0.7 0.449298
Target:  5'- uGGUGGGCCaCGGUGGGCaucGUGCc -3'
miRNA:   3'- uCCGCCCGGgGCCGCUCGauaCACGc -5'
14066 5' -63.2 NC_003521.1 + 178800 0.69 0.510763
Target:  5'- cGGGCGaGGCaugCCCGGCGGGCgg-GU-CGa -3'
miRNA:   3'- -UCCGC-CCG---GGGCCGCUCGauaCAcGC- -5'
14066 5' -63.2 NC_003521.1 + 40969 0.69 0.538172
Target:  5'- aAGGaCGGGCCCCGGgGGGac----GCGg -3'
miRNA:   3'- -UCC-GCCCGGGGCCgCUCgauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 210025 0.72 0.339923
Target:  5'- cGGCGGGCCCuCGGUGcGCUAcc-GCGc -3'
miRNA:   3'- uCCGCCCGGG-GCCGCuCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 163642 0.71 0.407985
Target:  5'- cGuGCGGGCCUCGGUGcGCgucucgGUGcUGCGg -3'
miRNA:   3'- uC-CGCCCGGGGCCGCuCGa-----UAC-ACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.