miRNA display CGI


Results 1 - 20 of 507 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14068 3' -60.9 NC_003521.1 + 119836 0.66 0.774026
Target:  5'- cCAGUgguaGGCGGUG-CGUCGGauauccacccgGGCCUCGGu -3'
miRNA:   3'- -GUCG----UCGUCGCgGCGGCU-----------UCGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 150699 0.66 0.782777
Target:  5'- -uGCuGCuGCGCCGgCGGcgacuGGCuCUCGGc -3'
miRNA:   3'- guCGuCGuCGCGGCgGCU-----UCG-GAGCC- -5'
14068 3' -60.9 NC_003521.1 + 193181 0.66 0.782777
Target:  5'- -uGC-GCAGCuGCCGCCaGAGCCgccgucaCGGc -3'
miRNA:   3'- guCGuCGUCG-CGGCGGcUUCGGa------GCC- -5'
14068 3' -60.9 NC_003521.1 + 6398 0.66 0.781907
Target:  5'- gCAGCuaccGCGGCGgCGaCGGGucuugccGCCUCGGg -3'
miRNA:   3'- -GUCGu---CGUCGCgGCgGCUU-------CGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 206175 0.66 0.782777
Target:  5'- cCAGgAGCAGgGCgGCCaGGGCCgCGa -3'
miRNA:   3'- -GUCgUCGUCgCGgCGGcUUCGGaGCc -5'
14068 3' -60.9 NC_003521.1 + 59544 0.66 0.782777
Target:  5'- gCAGCAccccuuucccGCguccGGCGCCGCgGggGUUUCGu -3'
miRNA:   3'- -GUCGU----------CG----UCGCGGCGgCuuCGGAGCc -5'
14068 3' -60.9 NC_003521.1 + 32379 0.66 0.782777
Target:  5'- uGGUGGC-GCGUgGCC-AGGuCCUCGGg -3'
miRNA:   3'- gUCGUCGuCGCGgCGGcUUC-GGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 132374 0.66 0.781907
Target:  5'- uCAGCGGCA-CGCCGCacacccgCGAGGUCaucCGGc -3'
miRNA:   3'- -GUCGUCGUcGCGGCG-------GCUUCGGa--GCC- -5'
14068 3' -60.9 NC_003521.1 + 180108 0.66 0.824587
Target:  5'- gGGCAGCGGCGUggugcgacccgCGCCGcc-CC-CGGg -3'
miRNA:   3'- gUCGUCGUCGCG-----------GCGGCuucGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 186591 0.66 0.780164
Target:  5'- aCGGUAGCAGcCGCCcggcagucgguacuGCCGGacaccGGCCagcagcggUCGGg -3'
miRNA:   3'- -GUCGUCGUC-GCGG--------------CGGCU-----UCGG--------AGCC- -5'
14068 3' -60.9 NC_003521.1 + 155604 0.66 0.781907
Target:  5'- gCAGCAGCaggagguGGCGaCCGCUGu--UCUCGGc -3'
miRNA:   3'- -GUCGUCG-------UCGC-GGCGGCuucGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 239846 0.66 0.774026
Target:  5'- cCAGCGGgAGCaGaCCGCCG--GCCUCu- -3'
miRNA:   3'- -GUCGUCgUCG-C-GGCGGCuuCGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 168936 0.66 0.774026
Target:  5'- gGGCgcaGGCAGgGCCGCCGcugucGCCgUCGc -3'
miRNA:   3'- gUCG---UCGUCgCGGCGGCuu---CGG-AGCc -5'
14068 3' -60.9 NC_003521.1 + 45630 0.66 0.782777
Target:  5'- -cGCAGaCGGCcaccGCCGCCGGcuCCgCGGg -3'
miRNA:   3'- guCGUC-GUCG----CGGCGGCUucGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 148903 0.66 0.774026
Target:  5'- -cGCcgAGgAGCGCCGCCGcGGCaUCGa -3'
miRNA:   3'- guCG--UCgUCGCGGCGGCuUCGgAGCc -5'
14068 3' -60.9 NC_003521.1 + 224027 0.66 0.781907
Target:  5'- cCGGCGGUcggggcgGGCGCCGUCGcc-CCUgGGa -3'
miRNA:   3'- -GUCGUCG-------UCGCGGCGGCuucGGAgCC- -5'
14068 3' -60.9 NC_003521.1 + 130003 0.66 0.782777
Target:  5'- cCGGCGGCGGCgcgcaacgGCCGCUGGcuuucAGCgUCa- -3'
miRNA:   3'- -GUCGUCGUCG--------CGGCGGCU-----UCGgAGcc -5'
14068 3' -60.9 NC_003521.1 + 118935 0.66 0.780164
Target:  5'- gGGCGGCGGCGUcccgucagggccagCGCCcGAGacagucccuCCUCGGu -3'
miRNA:   3'- gUCGUCGUCGCG--------------GCGGcUUC---------GGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 122814 0.66 0.774026
Target:  5'- -cGCGGCAGCGacaCGCCGccGCUaccgUCGu -3'
miRNA:   3'- guCGUCGUCGCg--GCGGCuuCGG----AGCc -5'
14068 3' -60.9 NC_003521.1 + 163105 0.66 0.782777
Target:  5'- gGGCGcCAGCGCCacgaccaccGCCGccuCCUCGGg -3'
miRNA:   3'- gUCGUcGUCGCGG---------CGGCuucGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.