miRNA display CGI


Results 1 - 20 of 507 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14068 3' -60.9 NC_003521.1 + 71 0.67 0.728735
Target:  5'- -cGCGGCGGCGUgCGgCGGgccGGCCggUCGGa -3'
miRNA:   3'- guCGUCGUCGCG-GCgGCU---UCGG--AGCC- -5'
14068 3' -60.9 NC_003521.1 + 96 0.66 0.824587
Target:  5'- gGGCGuGCAGgGagGCCGAAGCggCGGc -3'
miRNA:   3'- gUCGU-CGUCgCggCGGCUUCGgaGCC- -5'
14068 3' -60.9 NC_003521.1 + 364 0.66 0.782777
Target:  5'- aGGCGGCGccuGCGaCCGCUGcccGCCUCa- -3'
miRNA:   3'- gUCGUCGU---CGC-GGCGGCuu-CGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 417 0.67 0.719424
Target:  5'- -uGCAGCuguGUGCUGgCGAGGCCaagcCGGc -3'
miRNA:   3'- guCGUCGu--CGCGGCgGCUUCGGa---GCC- -5'
14068 3' -60.9 NC_003521.1 + 787 0.68 0.672024
Target:  5'- uCGGCGGaggaccgccCGGCGCCccGCCGA-GCCUCa- -3'
miRNA:   3'- -GUCGUC---------GUCGCGG--CGGCUuCGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 1445 0.69 0.623897
Target:  5'- -cGCgAGCuGCGCCGCCGGuggcAGCacaCGGg -3'
miRNA:   3'- guCG-UCGuCGCGGCGGCU----UCGga-GCC- -5'
14068 3' -60.9 NC_003521.1 + 2721 0.69 0.623897
Target:  5'- -uGCGGgAGCGCCGUCaccGCCUCGc -3'
miRNA:   3'- guCGUCgUCGCGGCGGcuuCGGAGCc -5'
14068 3' -60.9 NC_003521.1 + 3641 0.74 0.359478
Target:  5'- cUAGCGuGCcacGGcCGCCGCCGucuGCCUCGGc -3'
miRNA:   3'- -GUCGU-CG---UC-GCGGCGGCuu-CGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 5539 0.74 0.359478
Target:  5'- aCGGCAGcCGGCGCgGCCGccGCCaUCGu -3'
miRNA:   3'- -GUCGUC-GUCGCGgCGGCuuCGG-AGCc -5'
14068 3' -60.9 NC_003521.1 + 6398 0.66 0.781907
Target:  5'- gCAGCuaccGCGGCGgCGaCGGGucuugccGCCUCGGg -3'
miRNA:   3'- -GUCGu---CGUCGCgGCgGCUU-------CGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 6742 0.67 0.719424
Target:  5'- -cGCAGcCAGCGCuCGCCG-AGUCccaGGg -3'
miRNA:   3'- guCGUC-GUCGCG-GCGGCuUCGGag-CC- -5'
14068 3' -60.9 NC_003521.1 + 7095 0.66 0.811589
Target:  5'- gCGGCGGCGGCguccuccuucuccagGCCGCUGAGGU---GGa -3'
miRNA:   3'- -GUCGUCGUCG---------------CGGCGGCUUCGgagCC- -5'
14068 3' -60.9 NC_003521.1 + 7186 0.68 0.710046
Target:  5'- cCAGUA-CGGCGCCGCCGcugaaauuGcCCUCGa -3'
miRNA:   3'- -GUCGUcGUCGCGGCGGCuu------C-GGAGCc -5'
14068 3' -60.9 NC_003521.1 + 7757 0.66 0.782777
Target:  5'- gCGGCGGCAGUcccagcagacGCCGCaGAcgAGCCUUa- -3'
miRNA:   3'- -GUCGUCGUCG----------CGGCGgCU--UCGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 8466 0.66 0.780164
Target:  5'- -cGCuucGCGGUGCCGCCGcgacugcugcuacuGcuCCUCGGa -3'
miRNA:   3'- guCGu--CGUCGCGGCGGC--------------UucGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 13464 0.81 0.137716
Target:  5'- gCGGCGGUAGCGCCGUCGAcGGUCUgGGc -3'
miRNA:   3'- -GUCGUCGUCGCGGCGGCU-UCGGAgCC- -5'
14068 3' -60.9 NC_003521.1 + 13871 0.72 0.445492
Target:  5'- -uGCgGGCGGCGCCGCCauggauuucgccggGggGCC-CGGc -3'
miRNA:   3'- guCG-UCGUCGCGGCGG--------------CuuCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 14454 0.68 0.681591
Target:  5'- -uGCGGCGGCGUCaGCCGccGCUcccgCGGc -3'
miRNA:   3'- guCGUCGUCGCGG-CGGCuuCGGa---GCC- -5'
14068 3' -60.9 NC_003521.1 + 15230 0.68 0.700609
Target:  5'- aGGCGGCcgAGCgcgagGCCGCCGAGcGCCa-GGa -3'
miRNA:   3'- gUCGUCG--UCG-----CGGCGGCUU-CGGagCC- -5'
14068 3' -60.9 NC_003521.1 + 16213 0.69 0.623897
Target:  5'- aGGUGGCGGCGCCcuGCCGccuGGCCgagugCGa -3'
miRNA:   3'- gUCGUCGUCGCGG--CGGCu--UCGGa----GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.