Results 1 - 20 of 507 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14068 | 3' | -60.9 | NC_003521.1 | + | 142430 | 1.1 | 0.001358 |
Target: 5'- aCAGCAGCAGCGCCGCCGAAGCCUCGGg -3' miRNA: 3'- -GUCGUCGUCGCGGCGGCUUCGGAGCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 87624 | 0.85 | 0.074063 |
Target: 5'- uGGCAGCAgGUGCCGCCGcAGGCCUCGc -3' miRNA: 3'- gUCGUCGU-CGCGGCGGC-UUCGGAGCc -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 73150 | 0.84 | 0.086117 |
Target: 5'- gCGGCGGCGGCGCCGCCucGGCCUgCGa -3' miRNA: 3'- -GUCGUCGUCGCGGCGGcuUCGGA-GCc -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 90154 | 0.83 | 0.095168 |
Target: 5'- gCAGCAGCGGCGCCGCCGccggaGAGCCgccuUCGu -3' miRNA: 3'- -GUCGUCGUCGCGGCGGC-----UUCGG----AGCc -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 17489 | 0.83 | 0.099282 |
Target: 5'- cCGGUAGCGGCGCCGCCGGucacggcgguucccGGCC-CGGc -3' miRNA: 3'- -GUCGUCGUCGCGGCGGCU--------------UCGGaGCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 13464 | 0.81 | 0.137716 |
Target: 5'- gCGGCGGUAGCGCCGUCGAcGGUCUgGGc -3' miRNA: 3'- -GUCGUCGUCGCGGCGGCU-UCGGAgCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 110695 | 0.8 | 0.155421 |
Target: 5'- gCAGCGGCGGCGCCGCCGAcgacGCa--GGg -3' miRNA: 3'- -GUCGUCGUCGCGGCGGCUu---CGgagCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 74217 | 0.8 | 0.163064 |
Target: 5'- aCAGCAGCAGCagGCCGUCGgcGCCgugaCGGu -3' miRNA: 3'- -GUCGUCGUCG--CGGCGGCuuCGGa---GCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 177585 | 0.78 | 0.221409 |
Target: 5'- aGGUGGCGGCGCCGCCGGuuccGGCCguuccgcugcCGGa -3' miRNA: 3'- gUCGUCGUCGCGGCGGCU----UCGGa---------GCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 123584 | 0.77 | 0.226046 |
Target: 5'- uGGCGGCGGCgccgggaGCCGCCGcGGCCgucagCGGg -3' miRNA: 3'- gUCGUCGUCG-------CGGCGGCuUCGGa----GCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 28309 | 0.77 | 0.231826 |
Target: 5'- gCAGCGGCAGCGaCC-CCGGcgcGGCCUgCGGa -3' miRNA: 3'- -GUCGUCGUCGC-GGcGGCU---UCGGA-GCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 145871 | 0.77 | 0.231826 |
Target: 5'- gCGGCgGGCGGCGCCGacgaCGAGGCCgccggCGGc -3' miRNA: 3'- -GUCG-UCGUCGCGGCg---GCUUCGGa----GCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 198209 | 0.77 | 0.231826 |
Target: 5'- uGGCGGCgacGGCGCCGCCGGcGGCCgUGGu -3' miRNA: 3'- gUCGUCG---UCGCGGCGGCU-UCGGaGCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 144989 | 0.77 | 0.237187 |
Target: 5'- cCAGCGGCA-UGCCaCCGAGGCCUCGc -3' miRNA: 3'- -GUCGUCGUcGCGGcGGCUUCGGAGCc -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 54527 | 0.77 | 0.242651 |
Target: 5'- -uGCA-CGGCGCCGCUGggGCC-CGGc -3' miRNA: 3'- guCGUcGUCGCGGCGGCuuCGGaGCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 116414 | 0.77 | 0.253895 |
Target: 5'- gUAGCGGCGGCGauggcaCGCCGAuGCCUCu- -3' miRNA: 3'- -GUCGUCGUCGCg-----GCGGCUuCGGAGcc -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 161187 | 0.77 | 0.259675 |
Target: 5'- gCAGCAGCAGaCGaCGCCGAGGCgCcgCGGu -3' miRNA: 3'- -GUCGUCGUC-GCgGCGGCUUCG-Ga-GCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 150673 | 0.77 | 0.259675 |
Target: 5'- cCGGCGGCGGCGCCGCUGcuGCUg-GGu -3' miRNA: 3'- -GUCGUCGUCGCGGCGGCuuCGGagCC- -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 233641 | 0.77 | 0.259675 |
Target: 5'- uCAGCGGCGGCGCCGUacUGGAG-CUCGa -3' miRNA: 3'- -GUCGUCGUCGCGGCG--GCUUCgGAGCc -5' |
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14068 | 3' | -60.9 | NC_003521.1 | + | 77409 | 0.76 | 0.265563 |
Target: 5'- aGGCAGCGGCaGCCGacgaCGggGCCaCGGc -3' miRNA: 3'- gUCGUCGUCG-CGGCg---GCuuCGGaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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