miRNA display CGI


Results 1 - 20 of 507 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14068 3' -60.9 NC_003521.1 + 59432 0.74 0.352054
Target:  5'- aCAGCGGCGcCGCCGCCGGcAGCgagCUCGa -3'
miRNA:   3'- -GUCGUCGUcGCGGCGGCU-UCG---GAGCc -5'
14068 3' -60.9 NC_003521.1 + 153055 0.75 0.302509
Target:  5'- aGGCGGCccccaGGCcuccuccGCCGCCGggGCC-CGGg -3'
miRNA:   3'- gUCGUCG-----UCG-------CGGCGGCuuCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 43818 0.75 0.30915
Target:  5'- -cGCAGCAGCcgggucaGCCGCCGccGGCCgCGGg -3'
miRNA:   3'- guCGUCGUCG-------CGGCGGCu-UCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 224567 0.75 0.30982
Target:  5'- cCAGCGGCAGCGCaGCCGcAGGCUgaGGu -3'
miRNA:   3'- -GUCGUCGUCGCGgCGGC-UUCGGagCC- -5'
14068 3' -60.9 NC_003521.1 + 223318 0.75 0.314543
Target:  5'- -cGCAGCGcucgucGCGCUGCCGcagauaggugccccAGGCCUCGGc -3'
miRNA:   3'- guCGUCGU------CGCGGCGGC--------------UUCGGAGCC- -5'
14068 3' -60.9 NC_003521.1 + 30095 0.75 0.330441
Target:  5'- aCGGUAGCAGCGCCgaggGCUGGuugccAGCCUCa- -3'
miRNA:   3'- -GUCGUCGUCGCGG----CGGCU-----UCGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 127544 0.74 0.352054
Target:  5'- gCGGCGGCAGCacGCCGUCGGccaGGUgCUCGGc -3'
miRNA:   3'- -GUCGUCGUCG--CGGCGGCU---UCG-GAGCC- -5'
14068 3' -60.9 NC_003521.1 + 168548 0.74 0.352054
Target:  5'- gCGGCGGCGGCGCUGgCG-GGCUgCGGg -3'
miRNA:   3'- -GUCGUCGUCGCGGCgGCuUCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 42612 0.74 0.352054
Target:  5'- aCGGCcgccGGCGGCGCCGUCGccGCCaUGGa -3'
miRNA:   3'- -GUCG----UCGUCGCGGCGGCuuCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 137173 0.76 0.271558
Target:  5'- -cGCAGCGGcCGCCGCCGAGcuGCCcccgcuggagUCGGc -3'
miRNA:   3'- guCGUCGUC-GCGGCGGCUU--CGG----------AGCC- -5'
14068 3' -60.9 NC_003521.1 + 77409 0.76 0.265563
Target:  5'- aGGCAGCGGCaGCCGacgaCGggGCCaCGGc -3'
miRNA:   3'- gUCGUCGUCG-CGGCg---GCuuCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 150673 0.77 0.259675
Target:  5'- cCGGCGGCGGCGCCGCUGcuGCUg-GGu -3'
miRNA:   3'- -GUCGUCGUCGCGGCGGCuuCGGagCC- -5'
14068 3' -60.9 NC_003521.1 + 73150 0.84 0.086117
Target:  5'- gCGGCGGCGGCGCCGCCucGGCCUgCGa -3'
miRNA:   3'- -GUCGUCGUCGCGGCGGcuUCGGA-GCc -5'
14068 3' -60.9 NC_003521.1 + 17489 0.83 0.099282
Target:  5'- cCGGUAGCGGCGCCGCCGGucacggcgguucccGGCC-CGGc -3'
miRNA:   3'- -GUCGUCGUCGCGGCGGCU--------------UCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 28309 0.77 0.231826
Target:  5'- gCAGCGGCAGCGaCC-CCGGcgcGGCCUgCGGa -3'
miRNA:   3'- -GUCGUCGUCGC-GGcGGCU---UCGGA-GCC- -5'
14068 3' -60.9 NC_003521.1 + 145871 0.77 0.231826
Target:  5'- gCGGCgGGCGGCGCCGacgaCGAGGCCgccggCGGc -3'
miRNA:   3'- -GUCG-UCGUCGCGGCg---GCUUCGGa----GCC- -5'
14068 3' -60.9 NC_003521.1 + 144989 0.77 0.237187
Target:  5'- cCAGCGGCA-UGCCaCCGAGGCCUCGc -3'
miRNA:   3'- -GUCGUCGUcGCGGcGGCUUCGGAGCc -5'
14068 3' -60.9 NC_003521.1 + 54527 0.77 0.242651
Target:  5'- -uGCA-CGGCGCCGCUGggGCC-CGGc -3'
miRNA:   3'- guCGUcGUCGCGGCGGCuuCGGaGCC- -5'
14068 3' -60.9 NC_003521.1 + 116414 0.77 0.253895
Target:  5'- gUAGCGGCGGCGauggcaCGCCGAuGCCUCu- -3'
miRNA:   3'- -GUCGUCGUCGCg-----GCGGCUuCGGAGcc -5'
14068 3' -60.9 NC_003521.1 + 233641 0.77 0.259675
Target:  5'- uCAGCGGCGGCGCCGUacUGGAG-CUCGa -3'
miRNA:   3'- -GUCGUCGUCGCGGCG--GCUUCgGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.