Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14068 | 5' | -56 | NC_003521.1 | + | 221086 | 0.66 | 0.968543 |
Target: 5'- aGCCCGAcgCCGUCaccgccacgcugGUCAgcaGCGUguagGUc -3' miRNA: 3'- gCGGGCUuaGGCAG------------CAGUa--CGCGa---CA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 123480 | 0.66 | 0.968543 |
Target: 5'- aGCuCCGuGUCCGUCG-CcgGCGggGUg -3' miRNA: 3'- gCG-GGCuUAGGCAGCaGuaCGCgaCA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 120818 | 0.66 | 0.967656 |
Target: 5'- uGUCCGAGUCC-UCGUCgguauccuccucggGUGCcauGCUGg -3' miRNA: 3'- gCGGGCUUAGGcAGCAG--------------UACG---CGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 197002 | 0.66 | 0.965521 |
Target: 5'- uCGCCaguGAAgCCGUCGUCA-GUGCa-- -3' miRNA: 3'- -GCGGg--CUUaGGCAGCAGUaCGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 42447 | 0.66 | 0.965521 |
Target: 5'- cCGCCCGccacaaCGcCGUCcgGCGCUa- -3' miRNA: 3'- -GCGGGCuuag--GCaGCAGuaCGCGAca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 24206 | 0.66 | 0.965521 |
Target: 5'- gCGCCCGccuaCCGUCGaC-UGCuGCUGUc -3' miRNA: 3'- -GCGGGCuua-GGCAGCaGuACG-CGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 106389 | 0.66 | 0.9623 |
Target: 5'- cCGCCUcc-UCCGUCGUCGggugGCGUg-- -3' miRNA: 3'- -GCGGGcuuAGGCAGCAGUa---CGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 26744 | 0.66 | 0.958876 |
Target: 5'- aCGCCCGuga-UGUgGUCGgcGCGCUGg -3' miRNA: 3'- -GCGGGCuuagGCAgCAGUa-CGCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 129794 | 0.66 | 0.955245 |
Target: 5'- gCGCgCCGAggCCGaccgCGUCAaguugGUGCUGg -3' miRNA: 3'- -GCG-GGCUuaGGCa---GCAGUa----CGCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 117546 | 0.66 | 0.951402 |
Target: 5'- gGaCCUGAcgCUGUCGUCGcucaCGCUGUa -3' miRNA: 3'- gC-GGGCUuaGGCAGCAGUac--GCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 92208 | 0.67 | 0.947345 |
Target: 5'- cCGCCCGg--CCGcgCGaCGaGCGCUGUg -3' miRNA: 3'- -GCGGGCuuaGGCa-GCaGUaCGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 44147 | 0.67 | 0.933858 |
Target: 5'- -cUCCGAcgCCGUCGUCGaGCagcaGCUGg -3' miRNA: 3'- gcGGGCUuaGGCAGCAGUaCG----CGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 208170 | 0.67 | 0.933858 |
Target: 5'- uGCUCGAcuuuccgCCGUCGUC-UGCGCc-- -3' miRNA: 3'- gCGGGCUua-----GGCAGCAGuACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 5879 | 0.67 | 0.933858 |
Target: 5'- gGCUgGAG-CCGUCGUCGUccuCGCUGc -3' miRNA: 3'- gCGGgCUUaGGCAGCAGUAc--GCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 89457 | 0.67 | 0.928919 |
Target: 5'- uGCUCGuuguugUCGUCGUCAcGCGUUGa -3' miRNA: 3'- gCGGGCuua---GGCAGCAGUaCGCGACa -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 72438 | 0.68 | 0.923756 |
Target: 5'- aGUCCucg-CCGUCGUCGUcGCGaCUGUc -3' miRNA: 3'- gCGGGcuuaGGCAGCAGUA-CGC-GACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 163540 | 0.68 | 0.906935 |
Target: 5'- cCGCCCucuucuaccUCCGUC-UgAUGCGCUGUg -3' miRNA: 3'- -GCGGGcuu------AGGCAGcAgUACGCGACA- -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 205734 | 0.68 | 0.906935 |
Target: 5'- cCGCCuCGAAUCCGgcaUGUCGaGCGCc-- -3' miRNA: 3'- -GCGG-GCUUAGGCa--GCAGUaCGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 164891 | 0.68 | 0.906935 |
Target: 5'- gGCCgaGGAUCCGaCGUaCGUGCGCg-- -3' miRNA: 3'- gCGGg-CUUAGGCaGCA-GUACGCGaca -5' |
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14068 | 5' | -56 | NC_003521.1 | + | 53486 | 0.68 | 0.900887 |
Target: 5'- aGCCCGAaaaGUCC-UCGcgagCcgGUGCGCUGUu -3' miRNA: 3'- gCGGGCU---UAGGcAGCa---G--UACGCGACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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