miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 3' -53 NC_003521.1 + 113868 0.66 0.993481
Target:  5'- gGCGGUgguguaagcgCCGuCACGugUCGCCCGc--- -3'
miRNA:   3'- -CGCUA----------GGCuGUGUugAGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 92398 0.66 0.993481
Target:  5'- -gGAgccgCCGGCGCGGC-CGCCCGc--- -3'
miRNA:   3'- cgCUa---GGCUGUGUUGaGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 103509 0.66 0.993481
Target:  5'- gGCGAgCCcagcagcaGGCGCGcgaACUCGCUCAUGg- -3'
miRNA:   3'- -CGCUaGG--------CUGUGU---UGAGCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 120820 0.66 0.993481
Target:  5'- cUGAUCaacuacagccagCGGCGCAugUCGCCCGg--- -3'
miRNA:   3'- cGCUAG------------GCUGUGUugAGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 53199 0.66 0.992522
Target:  5'- aGCGGcgCgCGGCcCGGCUCGCCC-UGg- -3'
miRNA:   3'- -CGCUa-G-GCUGuGUUGAGCGGGuACaa -5'
14071 3' -53 NC_003521.1 + 184774 0.66 0.991453
Target:  5'- cGUGAUCUGGgGCAACgcgCGCCUg---- -3'
miRNA:   3'- -CGCUAGGCUgUGUUGa--GCGGGuacaa -5'
14071 3' -53 NC_003521.1 + 110372 0.66 0.991453
Target:  5'- cGCGA-CCGAaa-AACUCGgCCGUGa- -3'
miRNA:   3'- -CGCUaGGCUgugUUGAGCgGGUACaa -5'
14071 3' -53 NC_003521.1 + 67173 0.66 0.991453
Target:  5'- -gGGUCCcGCGCAGC-CGCCCGa--- -3'
miRNA:   3'- cgCUAGGcUGUGUUGaGCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 127282 0.66 0.991453
Target:  5'- cGCGGcacgUCCGACACGccguggugGCgCGCCUcgAUGUUg -3'
miRNA:   3'- -CGCU----AGGCUGUGU--------UGaGCGGG--UACAA- -5'
14071 3' -53 NC_003521.1 + 192778 0.66 0.988957
Target:  5'- uCGAUcuccaCCGGCACgGGCUUGCCCuUGUc -3'
miRNA:   3'- cGCUA-----GGCUGUG-UUGAGCGGGuACAa -5'
14071 3' -53 NC_003521.1 + 71872 0.66 0.988957
Target:  5'- cGUGAUCCG-UGCGGCUCuCCCA-GUa -3'
miRNA:   3'- -CGCUAGGCuGUGUUGAGcGGGUaCAa -5'
14071 3' -53 NC_003521.1 + 74603 0.66 0.987513
Target:  5'- cGCGG-CCGGCGCGcCUCGCCg----- -3'
miRNA:   3'- -CGCUaGGCUGUGUuGAGCGGguacaa -5'
14071 3' -53 NC_003521.1 + 17360 0.67 0.985927
Target:  5'- cGUGAcgCCGGCGCGGCg-GCCCAg--- -3'
miRNA:   3'- -CGCUa-GGCUGUGUUGagCGGGUacaa -5'
14071 3' -53 NC_003521.1 + 131323 0.67 0.983075
Target:  5'- aGCGG-CCGGCGCGaccACUCGCUggagcgccuggcgcgCAUGUUc -3'
miRNA:   3'- -CGCUaGGCUGUGU---UGAGCGG---------------GUACAA- -5'
14071 3' -53 NC_003521.1 + 78608 0.67 0.982298
Target:  5'- aGCGGagaggcaCCGACugcGCGGCUCGCCCcagGUa -3'
miRNA:   3'- -CGCUa------GGCUG---UGUUGAGCGGGua-CAa -5'
14071 3' -53 NC_003521.1 + 221631 0.67 0.978006
Target:  5'- aGCGAUCCGuCuucuGCAGCUCGUgCAcGUc -3'
miRNA:   3'- -CGCUAGGCuG----UGUUGAGCGgGUaCAa -5'
14071 3' -53 NC_003521.1 + 155063 0.67 0.978006
Target:  5'- uGCGAggcgCUGGC-CAcCUCGCUCAUGg- -3'
miRNA:   3'- -CGCUa---GGCUGuGUuGAGCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 126164 0.67 0.978006
Target:  5'- -aGGUCCuGCACGcGCaCGCCCAUGUc -3'
miRNA:   3'- cgCUAGGcUGUGU-UGaGCGGGUACAa -5'
14071 3' -53 NC_003521.1 + 151882 0.67 0.978006
Target:  5'- gGCGGcgcucucgcUCUGugAUcgcuGCUCGCCCGUGg- -3'
miRNA:   3'- -CGCU---------AGGCugUGu---UGAGCGGGUACaa -5'
14071 3' -53 NC_003521.1 + 226420 0.67 0.977773
Target:  5'- gGCGAUCuccgagcgCGACACGccguagcgcgccaGCUCGUCCAgGUUg -3'
miRNA:   3'- -CGCUAG--------GCUGUGU-------------UGAGCGGGUaCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.