miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 5' -55.2 NC_003521.1 + 239549 0.66 0.970691
Target:  5'- -cGGCgucGCGGGCGGCuagGGUcAGCGuGUugCg -3'
miRNA:   3'- gaUCG---UGCUCGCCG---CCA-UCGU-CAugG- -5'
14071 5' -55.2 NC_003521.1 + 91861 0.66 0.964682
Target:  5'- -gGGCgGCGgaccaGGaCGGCGGcGGCGGUGCg -3'
miRNA:   3'- gaUCG-UGC-----UC-GCCGCCaUCGUCAUGg -5'
14071 5' -55.2 NC_003521.1 + 87139 0.66 0.97593
Target:  5'- -gAGCGCGAgGUGuuggaGCGGgcGCAGUucgugcgcgcgGCCg -3'
miRNA:   3'- gaUCGUGCU-CGC-----CGCCauCGUCA-----------UGG- -5'
14071 5' -55.2 NC_003521.1 + 126496 0.66 0.964682
Target:  5'- -cAGCACGuuGgGGCaGGUGGCcgAGUAgCg -3'
miRNA:   3'- gaUCGUGCu-CgCCG-CCAUCG--UCAUgG- -5'
14071 5' -55.2 NC_003521.1 + 163160 0.66 0.970691
Target:  5'- -----cUGAGCGGUGGUGGCAGc--- -3'
miRNA:   3'- gaucguGCUCGCCGCCAUCGUCaugg -5'
14071 5' -55.2 NC_003521.1 + 235206 0.66 0.967786
Target:  5'- gUGGUGCGAcuGCGaCGaGUGGCAGUcgcACCu -3'
miRNA:   3'- gAUCGUGCU--CGCcGC-CAUCGUCA---UGG- -5'
14071 5' -55.2 NC_003521.1 + 145864 0.66 0.967786
Target:  5'- -gGGCcCG-GCGGCGG--GCGGcGCCg -3'
miRNA:   3'- gaUCGuGCuCGCCGCCauCGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 57185 0.66 0.970691
Target:  5'- -cAGCACGaAGCGGCGcaGGgAGUcAUCg -3'
miRNA:   3'- gaUCGUGC-UCGCCGCcaUCgUCA-UGG- -5'
14071 5' -55.2 NC_003521.1 + 58408 0.66 0.970691
Target:  5'- -cGGcCGCGugauGCGGCGGUugacgaagccgcAGCGcUGCCg -3'
miRNA:   3'- gaUC-GUGCu---CGCCGCCA------------UCGUcAUGG- -5'
14071 5' -55.2 NC_003521.1 + 75550 0.66 0.964682
Target:  5'- -cGGCGCcGGCGGCGGcUAcGcCAGcGCCc -3'
miRNA:   3'- gaUCGUGcUCGCCGCC-AU-C-GUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 111949 0.66 0.970691
Target:  5'- cCUGGCGCG-GCGGCaGGaugAGUcuGUugCg -3'
miRNA:   3'- -GAUCGUGCuCGCCG-CCa--UCGu-CAugG- -5'
14071 5' -55.2 NC_003521.1 + 138820 0.66 0.964682
Target:  5'- aUGGCGCGccugauGGCGGCGGcuacGGCcugcgGCCa -3'
miRNA:   3'- gAUCGUGC------UCGCCGCCa---UCGuca--UGG- -5'
14071 5' -55.2 NC_003521.1 + 115821 0.66 0.967786
Target:  5'- -aGGCGCGGGUGGCuc-AGCAGgcGCUg -3'
miRNA:   3'- gaUCGUGCUCGCCGccaUCGUCa-UGG- -5'
14071 5' -55.2 NC_003521.1 + 55193 0.66 0.964682
Target:  5'- ---aCACGAcCGGCGaUGGCAGUccGCCg -3'
miRNA:   3'- gaucGUGCUcGCCGCcAUCGUCA--UGG- -5'
14071 5' -55.2 NC_003521.1 + 76075 0.66 0.964682
Target:  5'- -cGGCgAUGuGCGGCaGGUuggacuGGCGGUACa -3'
miRNA:   3'- gaUCG-UGCuCGCCG-CCA------UCGUCAUGg -5'
14071 5' -55.2 NC_003521.1 + 132438 0.66 0.971799
Target:  5'- --cGCugGuAGCGGUGGUGGgcuguucggcgcgucCGGUcaGCCg -3'
miRNA:   3'- gauCGugC-UCGCCGCCAUC---------------GUCA--UGG- -5'
14071 5' -55.2 NC_003521.1 + 34383 0.66 0.964682
Target:  5'- --cGCACcAGCaGGUGGUGGCGcucggGCCa -3'
miRNA:   3'- gauCGUGcUCG-CCGCCAUCGUca---UGG- -5'
14071 5' -55.2 NC_003521.1 + 124853 0.66 0.971799
Target:  5'- --cGCGCcauggguccguugaaGAGCGGCGGcAGCAG-GCa -3'
miRNA:   3'- gauCGUG---------------CUCGCCGCCaUCGUCaUGg -5'
14071 5' -55.2 NC_003521.1 + 216239 0.66 0.973404
Target:  5'- -aGGCcuACGAGCGGgaGGUGGacgAGgagGCCg -3'
miRNA:   3'- gaUCG--UGCUCGCCg-CCAUCg--UCa--UGG- -5'
14071 5' -55.2 NC_003521.1 + 150462 0.66 0.967786
Target:  5'- cCUGGuCugGGGCGGCGaGcgccUGGUGGgGCCc -3'
miRNA:   3'- -GAUC-GugCUCGCCGC-C----AUCGUCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.