miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 5' -55.2 NC_003521.1 + 186391 0.72 0.76338
Target:  5'- -cGGCccaaGC-AGCGGCGGcAGCAGUGCa -3'
miRNA:   3'- gaUCG----UGcUCGCCGCCaUCGUCAUGg -5'
14071 5' -55.2 NC_003521.1 + 127536 0.73 0.696355
Target:  5'- -gAGCAUGuGCGGCGGcAGCAc-GCCg -3'
miRNA:   3'- gaUCGUGCuCGCCGCCaUCGUcaUGG- -5'
14071 5' -55.2 NC_003521.1 + 82828 0.73 0.706152
Target:  5'- -gGGCACcGGCGGCacaGGUGGaGGUGCCc -3'
miRNA:   3'- gaUCGUGcUCGCCG---CCAUCgUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 136685 0.73 0.706152
Target:  5'- -gAGCAcCGAGCagGGCGGgcccgAGCAGgacGCCg -3'
miRNA:   3'- gaUCGU-GCUCG--CCGCCa----UCGUCa--UGG- -5'
14071 5' -55.2 NC_003521.1 + 142678 0.73 0.715888
Target:  5'- -cAGCAgCGA-CGGCGGcAGCAGcUACCa -3'
miRNA:   3'- gaUCGU-GCUcGCCGCCaUCGUC-AUGG- -5'
14071 5' -55.2 NC_003521.1 + 168544 0.73 0.735149
Target:  5'- -cAGCGCG-GCGGCGGcgcUGGCGG-GCUg -3'
miRNA:   3'- gaUCGUGCuCGCCGCC---AUCGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 155617 0.72 0.741814
Target:  5'- gUGGCgaccgcuguucucgGCG-GCGGUGGUAGCAGaagcGCCg -3'
miRNA:   3'- gAUCG--------------UGCuCGCCGCCAUCGUCa---UGG- -5'
14071 5' -55.2 NC_003521.1 + 168352 0.72 0.754069
Target:  5'- gCUGGCgaaGAGCGGCGcGUAGCGGc--- -3'
miRNA:   3'- -GAUCGug-CUCGCCGC-CAUCGUCaugg -5'
14071 5' -55.2 NC_003521.1 + 195553 0.72 0.754069
Target:  5'- -aAGCACG-GUGcCaGUGGCAGUACCa -3'
miRNA:   3'- gaUCGUGCuCGCcGcCAUCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 74774 0.73 0.696355
Target:  5'- gUGGCugGAGUaugacgacGGCGGcAGCGGUAgCg -3'
miRNA:   3'- gAUCGugCUCG--------CCGCCaUCGUCAUgG- -5'
14071 5' -55.2 NC_003521.1 + 116882 0.73 0.686508
Target:  5'- gUGGCGCGGcuGCGGCGGcgcgccGGCGGgagACCc -3'
miRNA:   3'- gAUCGUGCU--CGCCGCCa-----UCGUCa--UGG- -5'
14071 5' -55.2 NC_003521.1 + 150530 0.74 0.626803
Target:  5'- -gAGCGgGAGCcgugggguccGGCGGUGGUGGUGCg -3'
miRNA:   3'- gaUCGUgCUCG----------CCGCCAUCGUCAUGg -5'
14071 5' -55.2 NC_003521.1 + 187894 0.85 0.19392
Target:  5'- -cGGCACGGGCGGCGGgGGCAGgucgAUCa -3'
miRNA:   3'- gaUCGUGCUCGCCGCCaUCGUCa---UGG- -5'
14071 5' -55.2 NC_003521.1 + 197176 0.78 0.436026
Target:  5'- cCUGGCA-GGGCuggaGGCGGUGGCGGUcCCa -3'
miRNA:   3'- -GAUCGUgCUCG----CCGCCAUCGUCAuGG- -5'
14071 5' -55.2 NC_003521.1 + 92018 0.78 0.436026
Target:  5'- -aGGCGCG-GCGGCGGcGGCGGUGgguCCg -3'
miRNA:   3'- gaUCGUGCuCGCCGCCaUCGUCAU---GG- -5'
14071 5' -55.2 NC_003521.1 + 232206 0.76 0.537923
Target:  5'- -gGGCccccGCGGGUGGUGGUGGCuGUGCg -3'
miRNA:   3'- gaUCG----UGCUCGCCGCCAUCGuCAUGg -5'
14071 5' -55.2 NC_003521.1 + 141361 0.76 0.557401
Target:  5'- -gGGUGCG-GCGGCGGUcggugacGCGGUGCCc -3'
miRNA:   3'- gaUCGUGCuCGCCGCCAu------CGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 195776 0.76 0.567217
Target:  5'- cCUGGCACGAGCGGCGc-GGCucucgACCc -3'
miRNA:   3'- -GAUCGUGCUCGCCGCcaUCGuca--UGG- -5'
14071 5' -55.2 NC_003521.1 + 101920 0.75 0.586972
Target:  5'- --cGCAcCGAGCGGCcguGGUGGUAGaUGCCc -3'
miRNA:   3'- gauCGU-GCUCGCCG---CCAUCGUC-AUGG- -5'
14071 5' -55.2 NC_003521.1 + 90082 0.75 0.5969
Target:  5'- -gGGCGCGcacGCGcGCGGUaaaaaagaAGCGGUGCCu -3'
miRNA:   3'- gaUCGUGCu--CGC-CGCCA--------UCGUCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.