miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 5' -55.2 NC_003521.1 + 108 0.67 0.946016
Target:  5'- -aGGC-CGaAGCGGCGGccggAGCcGUGCa -3'
miRNA:   3'- gaUCGuGC-UCGCCGCCa---UCGuCAUGg -5'
14071 5' -55.2 NC_003521.1 + 5303 0.66 0.970691
Target:  5'- -cGGCAUGuuucGCGGgGGcGGC-GUGCCc -3'
miRNA:   3'- gaUCGUGCu---CGCCgCCaUCGuCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 6993 0.68 0.932172
Target:  5'- --cGCACGAcaCGGCGGUGGa--UACCg -3'
miRNA:   3'- gauCGUGCUc-GCCGCCAUCgucAUGG- -5'
14071 5' -55.2 NC_003521.1 + 7660 0.69 0.87847
Target:  5'- --cGcCACG-GCGGCGcGgacAGCGGUGCCc -3'
miRNA:   3'- gauC-GUGCuCGCCGC-Ca--UCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 7740 0.84 0.218787
Target:  5'- -cGGCGCGAGCGGCGGaggcggcGGCAGUcCCa -3'
miRNA:   3'- gaUCGUGCUCGCCGCCa------UCGUCAuGG- -5'
14071 5' -55.2 NC_003521.1 + 7983 0.69 0.904564
Target:  5'- -gGGUccGCG-GCGGCGGgGGaGGUACCg -3'
miRNA:   3'- gaUCG--UGCuCGCCGCCaUCgUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 8445 0.75 0.575101
Target:  5'- -cAGCGCGAGaCGGUGGaccuccgcuucGCGGUGCCg -3'
miRNA:   3'- gaUCGUGCUC-GCCGCCau---------CGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 12713 0.67 0.957858
Target:  5'- gUAaCGCGAGCGuugccaaCGGUauguucuaucGGCAGUACCa -3'
miRNA:   3'- gAUcGUGCUCGCc------GCCA----------UCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 12917 0.72 0.781661
Target:  5'- cCUGGCGCuGGUGGCGGgacCAGgGCCg -3'
miRNA:   3'- -GAUCGUGcUCGCCGCCaucGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 13457 0.76 0.537923
Target:  5'- -aAGCGC-AGCGGCGGUAGC---GCCg -3'
miRNA:   3'- gaUCGUGcUCGCCGCCAUCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 13640 0.67 0.946016
Target:  5'- -gGGCugGgaagGGCGGCGGaGGCGGg--- -3'
miRNA:   3'- gaUCGugC----UCGCCGCCaUCGUCaugg -5'
14071 5' -55.2 NC_003521.1 + 13850 0.66 0.967484
Target:  5'- uUGGCuCGGcGCGGgGGUcucugcgGGCGGcGCCg -3'
miRNA:   3'- gAUCGuGCU-CGCCgCCA-------UCGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 13990 0.74 0.64677
Target:  5'- -cGGCGCG-GCGGCGGgcgaggaccccaUGGCGcuGUACCg -3'
miRNA:   3'- gaUCGUGCuCGCCGCC------------AUCGU--CAUGG- -5'
14071 5' -55.2 NC_003521.1 + 14933 0.66 0.97593
Target:  5'- -gAGCGCGAGCGGC---AGC---GCCa -3'
miRNA:   3'- gaUCGUGCUCGCCGccaUCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 15061 0.73 0.725557
Target:  5'- -gAGCGCGAGCGGCGcGUgcugcaacAGCAcUACg -3'
miRNA:   3'- gaUCGUGCUCGCCGC-CA--------UCGUcAUGg -5'
14071 5' -55.2 NC_003521.1 + 17004 0.67 0.954128
Target:  5'- -aGGCGCccGCGGUGGcGGCGGcgcagGCCc -3'
miRNA:   3'- gaUCGUGcuCGCCGCCaUCGUCa----UGG- -5'
14071 5' -55.2 NC_003521.1 + 17239 0.68 0.932172
Target:  5'- aUGGCaaGCGAGCcggcgucuucGGUGGaagaggAGCAGUAUCg -3'
miRNA:   3'- gAUCG--UGCUCG----------CCGCCa-----UCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 18253 0.72 0.77258
Target:  5'- -cGGgACGAGCGGUGGUGG-GG-ACCu -3'
miRNA:   3'- gaUCgUGCUCGCCGCCAUCgUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 18730 0.72 0.77258
Target:  5'- gCUGGCgGCGgcgaucguGGCGGCGGUGGC---GCCg -3'
miRNA:   3'- -GAUCG-UGC--------UCGCCGCCAUCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 19117 0.71 0.790614
Target:  5'- --cGaCGCGGGUGGCGGgccgccGguGUACCa -3'
miRNA:   3'- gauC-GUGCUCGCCGCCau----CguCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.