miRNA display CGI


Results 1 - 20 of 298 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14071 5' -55.2 NC_003521.1 + 141955 1.13 0.003204
Target:  5'- cCUAGCACGAGCGGCGGUAGCAGUACCa -3'
miRNA:   3'- -GAUCGUGCUCGCCGCCAUCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 118276 0.85 0.180216
Target:  5'- -cGGCACcAGCGGCGGUAGCAGcagcacUACCa -3'
miRNA:   3'- gaUCGUGcUCGCCGCCAUCGUC------AUGG- -5'
14071 5' -55.2 NC_003521.1 + 187894 0.85 0.19392
Target:  5'- -cGGCACGGGCGGCGGgGGCAGgucgAUCa -3'
miRNA:   3'- gaUCGUGCUCGCCGCCaUCGUCa---UGG- -5'
14071 5' -55.2 NC_003521.1 + 76406 0.84 0.198687
Target:  5'- gCUAGCACcAGCGGCGGUguGGUGGUGCUg -3'
miRNA:   3'- -GAUCGUGcUCGCCGCCA--UCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 122524 0.84 0.213605
Target:  5'- -gGGCAgGccGGCGGCGGUGGUAGUGCUg -3'
miRNA:   3'- gaUCGUgC--UCGCCGCCAUCGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 7740 0.84 0.218787
Target:  5'- -cGGCGCGAGCGGCGGaggcggcGGCAGUcCCa -3'
miRNA:   3'- gaUCGUGCUCGCCGCCa------UCGUCAuGG- -5'
14071 5' -55.2 NC_003521.1 + 163336 0.8 0.369318
Target:  5'- -cGGCACuAGCGGCGGUuguAGCGGUAgCa -3'
miRNA:   3'- gaUCGUGcUCGCCGCCA---UCGUCAUgG- -5'
14071 5' -55.2 NC_003521.1 + 108284 0.79 0.393506
Target:  5'- -cGGCACcgaGGGCGGUGGUGGCGGUGa- -3'
miRNA:   3'- gaUCGUG---CUCGCCGCCAUCGUCAUgg -5'
14071 5' -55.2 NC_003521.1 + 171602 0.79 0.401793
Target:  5'- -cAGCGgaaccCGAGCGGCGGcGGgAGUGCCg -3'
miRNA:   3'- gaUCGU-----GCUCGCCGCCaUCgUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 98628 0.79 0.410191
Target:  5'- -gGGCGaGAGCGGCGGcGGCGGUAgCg -3'
miRNA:   3'- gaUCGUgCUCGCCGCCaUCGUCAUgG- -5'
14071 5' -55.2 NC_003521.1 + 50486 0.78 0.416134
Target:  5'- -cGGCGCGugccacagcgugucGGCGGCGGUGGagauGGUACCa -3'
miRNA:   3'- gaUCGUGC--------------UCGCCGCCAUCg---UCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 166790 0.78 0.427309
Target:  5'- uCUGGCAguaggaggUGAcGCGGCGGUAgagcucgcGCAGUACCa -3'
miRNA:   3'- -GAUCGU--------GCU-CGCCGCCAU--------CGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 197176 0.78 0.436026
Target:  5'- cCUGGCA-GGGCuggaGGCGGUGGCGGUcCCa -3'
miRNA:   3'- -GAUCGUgCUCG----CCGCCAUCGUCAuGG- -5'
14071 5' -55.2 NC_003521.1 + 92018 0.78 0.436026
Target:  5'- -aGGCGCG-GCGGCGGcGGCGGUGgguCCg -3'
miRNA:   3'- gaUCGUGCuCGCCGCCaUCGUCAU---GG- -5'
14071 5' -55.2 NC_003521.1 + 102342 0.78 0.444843
Target:  5'- gCUGGUagACGGGCGGCaGGUGGCAGauguggcGCCg -3'
miRNA:   3'- -GAUCG--UGCUCGCCG-CCAUCGUCa------UGG- -5'
14071 5' -55.2 NC_003521.1 + 103125 0.76 0.528271
Target:  5'- gCUGGCgcaGCGcGCGGCGGUGcuGCAGcACCa -3'
miRNA:   3'- -GAUCG---UGCuCGCCGCCAU--CGUCaUGG- -5'
14071 5' -55.2 NC_003521.1 + 13457 0.76 0.537923
Target:  5'- -aAGCGC-AGCGGCGGUAGC---GCCg -3'
miRNA:   3'- gaUCGUGcUCGCCGCCAUCGucaUGG- -5'
14071 5' -55.2 NC_003521.1 + 232206 0.76 0.537923
Target:  5'- -gGGCccccGCGGGUGGUGGUGGCuGUGCg -3'
miRNA:   3'- gaUCG----UGCUCGCCGCCAUCGuCAUGg -5'
14071 5' -55.2 NC_003521.1 + 141361 0.76 0.557401
Target:  5'- -gGGUGCG-GCGGCGGUcggugacGCGGUGCCc -3'
miRNA:   3'- gaUCGUGCuCGCCGCCAu------CGUCAUGG- -5'
14071 5' -55.2 NC_003521.1 + 195776 0.76 0.567217
Target:  5'- cCUGGCACGAGCGGCGc-GGCucucgACCc -3'
miRNA:   3'- -GAUCGUGCUCGCCGCcaUCGuca--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.