miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 5' -54.9 NC_003521.1 + 240383 0.68 0.941613
Target:  5'- cUCACCGgcuggCUUacCGCCGGCuuGGCCucGCCAGc -3'
miRNA:   3'- -AGUGGUa----GAA--GCGGCUG--CUGG--UGGUC- -5'
14073 5' -54.9 NC_003521.1 + 239710 0.68 0.937019
Target:  5'- gUCGCCG-CcUCGUgGACGauggugGCCACCAGc -3'
miRNA:   3'- -AGUGGUaGaAGCGgCUGC------UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 238579 0.68 0.945985
Target:  5'- gUACCAUCgucaUCGCgGACGACgGCg-- -3'
miRNA:   3'- aGUGGUAGa---AGCGgCUGCUGgUGguc -5'
14073 5' -54.9 NC_003521.1 + 235487 0.67 0.967687
Target:  5'- cUUACCA-CUaUCGCCGgagucGCGGCCGgCGGg -3'
miRNA:   3'- -AGUGGUaGA-AGCGGC-----UGCUGGUgGUC- -5'
14073 5' -54.9 NC_003521.1 + 235308 0.68 0.937488
Target:  5'- gUCACCGUCgcugcugcuacuccUGCCGA-GACgGCCAGa -3'
miRNA:   3'- -AGUGGUAGaa------------GCGGCUgCUGgUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 233166 0.72 0.800187
Target:  5'- cCGCUGUCcgCGCCGccgugGCGGCCGCCGu -3'
miRNA:   3'- aGUGGUAGaaGCGGC-----UGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 232388 0.71 0.849514
Target:  5'- cCACCGUCUcgCGCUGGCugcGCCugCGGc -3'
miRNA:   3'- aGUGGUAGAa-GCGGCUGc--UGGugGUC- -5'
14073 5' -54.9 NC_003521.1 + 231708 0.71 0.817283
Target:  5'- cUUACCAUCUggccuuguUCGUCGACGuCCuCCGGc -3'
miRNA:   3'- -AGUGGUAGA--------AGCGGCUGCuGGuGGUC- -5'
14073 5' -54.9 NC_003521.1 + 226439 0.7 0.869614
Target:  5'- aCGCCGUagcgCGCCagcucguccagguuGugGGCCACCAGc -3'
miRNA:   3'- aGUGGUAgaa-GCGG--------------CugCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 225525 0.76 0.577914
Target:  5'- gCGCCGUCgcgCGUCGACGAacgcucgUCACCAGg -3'
miRNA:   3'- aGUGGUAGaa-GCGGCUGCU-------GGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 224723 0.68 0.941613
Target:  5'- cCGCCcgUggugcUCGCCGACGcagGCgGCCAGc -3'
miRNA:   3'- aGUGGuaGa----AGCGGCUGC---UGgUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 223783 0.84 0.231508
Target:  5'- gCGCCGUUacCGCCGugGGCCGCCAGa -3'
miRNA:   3'- aGUGGUAGaaGCGGCugCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 223459 0.68 0.941613
Target:  5'- gCGCCAguagcaacgagUCUcgGCCGuuGGCCACCAGc -3'
miRNA:   3'- aGUGGU-----------AGAagCGGCugCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 223057 0.7 0.885584
Target:  5'- -gACCGUCcgcCGCCGGCGguACgGCCAGu -3'
miRNA:   3'- agUGGUAGaa-GCGGCUGC--UGgUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 223037 0.74 0.668144
Target:  5'- -gGCCAgca-CGCCGACGGCCuCCAGg -3'
miRNA:   3'- agUGGUagaaGCGGCUGCUGGuGGUC- -5'
14073 5' -54.9 NC_003521.1 + 222748 0.66 0.982342
Target:  5'- gCGCCGUCUggGCU-ACGGCCACg-- -3'
miRNA:   3'- aGUGGUAGAagCGGcUGCUGGUGguc -5'
14073 5' -54.9 NC_003521.1 + 221787 0.66 0.982342
Target:  5'- uUCAUCGUCUUCcUCGGCGGgCAUgGGc -3'
miRNA:   3'- -AGUGGUAGAAGcGGCUGCUgGUGgUC- -5'
14073 5' -54.9 NC_003521.1 + 221762 0.68 0.941613
Target:  5'- gUCAgCGUCUgCGCCG-CG-CCGCCGu -3'
miRNA:   3'- -AGUgGUAGAaGCGGCuGCuGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 221636 0.67 0.957785
Target:  5'- --uCCGUCUUCugcagcucguGCaCGuCGGCCACCAGc -3'
miRNA:   3'- aguGGUAGAAG----------CG-GCuGCUGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 220860 0.66 0.980335
Target:  5'- gUCACgAUCacCGCCagccCGGCCACCAu -3'
miRNA:   3'- -AGUGgUAGaaGCGGcu--GCUGGUGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.