miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 3' -53.5 NC_003521.1 + 95632 0.66 0.984533
Target:  5'- -aCcgUGUCGaggcgcAGCAgGUGCCAGACGgAg -3'
miRNA:   3'- aaGuaGCAGU------UCGU-CACGGUCUGCgU- -5'
14091 3' -53.5 NC_003521.1 + 185739 0.66 0.984533
Target:  5'- gUgAUCGcCGAGCGGgugcGCCGGAgCGCc -3'
miRNA:   3'- aAgUAGCaGUUCGUCa---CGGUCU-GCGu -5'
14091 3' -53.5 NC_003521.1 + 84203 0.66 0.984533
Target:  5'- -cCAgggCGUCGcGCAGcaCCAGGCGCGa -3'
miRNA:   3'- aaGUa--GCAGUuCGUCacGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 22023 0.66 0.982645
Target:  5'- aUCAUacaccCGUCAcccacccagaAGuCAGaGCCGGACGCAg -3'
miRNA:   3'- aAGUA-----GCAGU----------UC-GUCaCGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 214802 0.66 0.982645
Target:  5'- cUUCAccgcCGUCGGGC---GCCGGGCGCGg -3'
miRNA:   3'- -AAGUa---GCAGUUCGucaCGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 206776 0.66 0.980588
Target:  5'- aUUAUCGUCGAGUAucGCgacauaaaaCAGACGCGg -3'
miRNA:   3'- aAGUAGCAGUUCGUcaCG---------GUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 69994 0.66 0.980588
Target:  5'- gUC-UCGUCGuGCAGUcCCAGcgaGCGCAg -3'
miRNA:   3'- aAGuAGCAGUuCGUCAcGGUC---UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 196352 0.66 0.980588
Target:  5'- -cCAgcgCGUgCAGGUAGUGCguGGCGUu -3'
miRNA:   3'- aaGUa--GCA-GUUCGUCACGguCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 141705 0.66 0.978354
Target:  5'- aUCA-CGUC-GGUAGuUGCUGGACGCu -3'
miRNA:   3'- aAGUaGCAGuUCGUC-ACGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 225548 0.66 0.978354
Target:  5'- cUCGUCacCAGGCAGUGC-AGACGgGg -3'
miRNA:   3'- aAGUAGcaGUUCGUCACGgUCUGCgU- -5'
14091 3' -53.5 NC_003521.1 + 76043 0.66 0.975935
Target:  5'- cUCcUCG--GAGCGGgccGCCAGACGCu -3'
miRNA:   3'- aAGuAGCagUUCGUCa--CGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 87792 0.66 0.975935
Target:  5'- cUCGUCGgucUCGGGCGGccuggGCCAGGaGCGg -3'
miRNA:   3'- aAGUAGC---AGUUCGUCa----CGGUCUgCGU- -5'
14091 3' -53.5 NC_003521.1 + 185050 0.66 0.975935
Target:  5'- gUUCAUCuUCGAGCuGUaccGCCGGcCGCGc -3'
miRNA:   3'- -AAGUAGcAGUUCGuCA---CGGUCuGCGU- -5'
14091 3' -53.5 NC_003521.1 + 169452 0.66 0.975935
Target:  5'- -gCGUCGgCGgcGGCGGguucgucGCCAGGCGCGu -3'
miRNA:   3'- aaGUAGCaGU--UCGUCa------CGGUCUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 108030 0.67 0.973325
Target:  5'- gUCggCGUCAGGCGGcgGCgGgauGACGCGa -3'
miRNA:   3'- aAGuaGCAGUUCGUCa-CGgU---CUGCGU- -5'
14091 3' -53.5 NC_003521.1 + 219104 0.67 0.973325
Target:  5'- -gCAUCGUCAccagccacaugAGCAGcGCCGuaGCGCAg -3'
miRNA:   3'- aaGUAGCAGU-----------UCGUCaCGGUc-UGCGU- -5'
14091 3' -53.5 NC_003521.1 + 218351 0.67 0.973325
Target:  5'- gUUCAUCacCAGGCAGgccaccgugaGCCAGGCGUg -3'
miRNA:   3'- -AAGUAGcaGUUCGUCa---------CGGUCUGCGu -5'
14091 3' -53.5 NC_003521.1 + 114131 0.67 0.973325
Target:  5'- aUCAUgGUCGAGUAcUGCCuGGCGg- -3'
miRNA:   3'- aAGUAgCAGUUCGUcACGGuCUGCgu -5'
14091 3' -53.5 NC_003521.1 + 117276 0.67 0.970515
Target:  5'- -cCGUCGUCGGccGUGGUGCCGGcuccccucACGCu -3'
miRNA:   3'- aaGUAGCAGUU--CGUCACGGUC--------UGCGu -5'
14091 3' -53.5 NC_003521.1 + 78219 0.67 0.967187
Target:  5'- cUCGUCGgaggcugUCGAGCgAGUGCCAc-CGCAg -3'
miRNA:   3'- aAGUAGC-------AGUUCG-UCACGGUcuGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.