miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14092 3' -49.8 NC_003521.1 + 227236 0.73 0.934456
Target:  5'- aCUCGUCGCCAGGGgggcCAAUcggACCGUCGGa -3'
miRNA:   3'- -GAGUGGUGGUCCUa---GUUA---UGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 226844 0.66 0.9992
Target:  5'- -cCGCCGCCGcgccGGG-CAGgcCCAUCAGg -3'
miRNA:   3'- gaGUGGUGGU----CCUaGUUauGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 223758 0.71 0.980483
Target:  5'- gUCGCCGCCAG---CGGUAUCGUCGGc -3'
miRNA:   3'- gAGUGGUGGUCcuaGUUAUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 223698 0.66 0.9992
Target:  5'- -gCGCCGgCAGGAUCGAcgACCucgcCGGg -3'
miRNA:   3'- gaGUGGUgGUCCUAGUUa-UGGua--GUC- -5'
14092 3' -49.8 NC_003521.1 + 220936 0.68 0.997564
Target:  5'- -aCAgCAgCAGGAUCAGcgccgacgcgGCCGUCAGc -3'
miRNA:   3'- gaGUgGUgGUCCUAGUUa---------UGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 220866 0.66 0.99966
Target:  5'- aUCACCGCCAGcc-CGGccACCAUCAc -3'
miRNA:   3'- gAGUGGUGGUCcuaGUUa-UGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 218906 0.67 0.99795
Target:  5'- -cCGcCCGCCAGGGUCucgACUgcGUCAGc -3'
miRNA:   3'- gaGU-GGUGGUCCUAGuuaUGG--UAGUC- -5'
14092 3' -49.8 NC_003521.1 + 214787 0.69 0.992819
Target:  5'- gCUCGCCGCCGuccucuUCAccGCCGUCGGg -3'
miRNA:   3'- -GAGUGGUGGUccu---AGUuaUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 211742 0.66 0.999472
Target:  5'- -gCGCCACCAuGAgcUCGAUGCCcacCAGg -3'
miRNA:   3'- gaGUGGUGGUcCU--AGUUAUGGua-GUC- -5'
14092 3' -49.8 NC_003521.1 + 210559 0.7 0.987822
Target:  5'- -gCGcCCGCCAGGGUCAGcugGCCA-CGGc -3'
miRNA:   3'- gaGU-GGUGGUCCUAGUUa--UGGUaGUC- -5'
14092 3' -49.8 NC_003521.1 + 202117 0.71 0.97026
Target:  5'- -gCGCCACCAGGAcgcccgCgAGUAUCAUCAa -3'
miRNA:   3'- gaGUGGUGGUCCUa-----G-UUAUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 201479 0.67 0.998253
Target:  5'- uCUCGCCuauacccACCAGGGccagcgauaaUCGAUugCGUCGc -3'
miRNA:   3'- -GAGUGG-------UGGUCCU----------AGUUAugGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 193799 0.68 0.996025
Target:  5'- -aCACaauGCCGGGcgUggUACCGUUAGa -3'
miRNA:   3'- gaGUGg--UGGUCCuaGuuAUGGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 190594 0.66 0.9994
Target:  5'- uUCACCAgCCAGcGGUaacuccacacagccgCAGUAgCGUCAGg -3'
miRNA:   3'- gAGUGGU-GGUC-CUA---------------GUUAUgGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 190013 0.74 0.923855
Target:  5'- -cCACCACCGGGGaCAccgcUGCCAUCAc -3'
miRNA:   3'- gaGUGGUGGUCCUaGUu---AUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 187667 0.69 0.991759
Target:  5'- cCUCGCCGCCGuccccgacguGGuUCAAgACCAUCGc -3'
miRNA:   3'- -GAGUGGUGGU----------CCuAGUUaUGGUAGUc -5'
14092 3' -49.8 NC_003521.1 + 186474 0.66 0.99946
Target:  5'- gCUCGCCAcgccccgaguggcCCAGGG-CGAgagccCCGUCGGg -3'
miRNA:   3'- -GAGUGGU-------------GGUCCUaGUUau---GGUAGUC- -5'
14092 3' -49.8 NC_003521.1 + 184407 0.67 0.99795
Target:  5'- gUCACCAaguaCAGGAUCAgcagcacgAUACCcacCAGa -3'
miRNA:   3'- gAGUGGUg---GUCCUAGU--------UAUGGua-GUC- -5'
14092 3' -49.8 NC_003521.1 + 181214 0.69 0.993767
Target:  5'- gUCGCCGCCGGGGccgccgcCAcUACCGUCc- -3'
miRNA:   3'- gAGUGGUGGUCCUa------GUuAUGGUAGuc -5'
14092 3' -49.8 NC_003521.1 + 180659 0.66 0.999348
Target:  5'- gCUCGCUACCGGGG-CGAcgacauCCAcCAGg -3'
miRNA:   3'- -GAGUGGUGGUCCUaGUUau----GGUaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.