miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 3' -57.1 NC_003521.1 + 223451 0.66 0.930497
Target:  5'- gGUCCCUcucGAGUcuGGGCCGccGCGcCGGCg -3'
miRNA:   3'- gUAGGGG---UUCA--CCCGGUa-CGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 162850 0.66 0.902465
Target:  5'- gAUCCCCGugaAGUucGuGGCCAacgcGCAGgGGCg -3'
miRNA:   3'- gUAGGGGU---UCA--C-CCGGUa---CGUCgUCG- -5'
14094 3' -57.1 NC_003521.1 + 126139 0.66 0.902465
Target:  5'- ---aCCCAcGUaGGGCCAgGCGGCGucGCg -3'
miRNA:   3'- guagGGGUuCA-CCCGGUaCGUCGU--CG- -5'
14094 3' -57.1 NC_003521.1 + 152099 0.66 0.927433
Target:  5'- gGUCUCCAgcagaaacacGGUGGaguaGCCcacgaagcuggucccGUGCAGCAGUu -3'
miRNA:   3'- gUAGGGGU----------UCACC----CGG---------------UACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 46737 0.66 0.919965
Target:  5'- uCGUgCCCCA---GGGCCcc-CAGCAGCu -3'
miRNA:   3'- -GUA-GGGGUucaCCCGGuacGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 74162 0.66 0.919965
Target:  5'- ---gCCCAGGUGccgcuGGCCGacUGCGccGCGGCg -3'
miRNA:   3'- guagGGGUUCAC-----CCGGU--ACGU--CGUCG- -5'
14094 3' -57.1 NC_003521.1 + 75782 0.66 0.930497
Target:  5'- --cCUCCAGGUGcagacGCC--GCGGCAGCa -3'
miRNA:   3'- guaGGGGUUCACc----CGGuaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 5489 0.66 0.924817
Target:  5'- -uUCCCCccuuAGaucuGGCCGUcucggcaggaguaGCAGCAGCg -3'
miRNA:   3'- guAGGGGu---UCac--CCGGUA-------------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 209710 0.66 0.930497
Target:  5'- aCAggcgCUCCAGGUccgagGaGGUCGUGC-GCAGCg -3'
miRNA:   3'- -GUa---GGGGUUCA-----C-CCGGUACGuCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 140947 0.66 0.930497
Target:  5'- --cCCCUAcauggagacGGUGGccGCCAUGCGcCAGCu -3'
miRNA:   3'- guaGGGGU---------UCACC--CGGUACGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 166078 0.66 0.914358
Target:  5'- -cUCCCgCA---GGGCCAUaGCGGgAGCg -3'
miRNA:   3'- guAGGG-GUucaCCCGGUA-CGUCgUCG- -5'
14094 3' -57.1 NC_003521.1 + 204013 0.66 0.914358
Target:  5'- uCAUgCCCGAGUccGCCGUccGCgAGCGGCu -3'
miRNA:   3'- -GUAgGGGUUCAccCGGUA--CG-UCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 28453 0.66 0.908524
Target:  5'- uCGUCgCCAuccAGccuUGGGCgGUGCAcCAGCg -3'
miRNA:   3'- -GUAGgGGU---UC---ACCCGgUACGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 219675 0.66 0.919965
Target:  5'- aCAgCCCCGGG-GGGCCcgcGCGGacggAGCa -3'
miRNA:   3'- -GUaGGGGUUCaCCCGGua-CGUCg---UCG- -5'
14094 3' -57.1 NC_003521.1 + 108771 0.66 0.930497
Target:  5'- --aCCCUAGGcgcUGaGGCgCG-GCAGCAGCc -3'
miRNA:   3'- guaGGGGUUC---AC-CCG-GUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 124430 0.66 0.901847
Target:  5'- -cUCCUCGuccggcgagacguGGuUGGGCC--GCGGCGGCa -3'
miRNA:   3'- guAGGGGU-------------UC-ACCCGGuaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 153185 0.66 0.902465
Target:  5'- --cCUCCAGccuGUGcgaGGCC-UGCGGCGGCa -3'
miRNA:   3'- guaGGGGUU---CAC---CCGGuACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 145856 0.66 0.914358
Target:  5'- gCGUCUC----UGGGCCcgGCGGCGGg -3'
miRNA:   3'- -GUAGGGguucACCCGGuaCGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 43463 0.66 0.919965
Target:  5'- --cUCUCAcAGcGGGCCAgcGCGGCGGCc -3'
miRNA:   3'- guaGGGGU-UCaCCCGGUa-CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 29233 0.66 0.919965
Target:  5'- gAUCCUCuacUGGGCCuccaGCcGCGGCg -3'
miRNA:   3'- gUAGGGGuucACCCGGua--CGuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.