miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 3' -57.1 NC_003521.1 + 131051 1.11 0.002333
Target:  5'- cCAUCCCCAAGUGGGCCAUGCAGCAGCu -3'
miRNA:   3'- -GUAGGGGUUCACCCGGUACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 124946 0.82 0.187095
Target:  5'- aGUCCgUggGUGGGCaCGUGCAGCAGg -3'
miRNA:   3'- gUAGGgGuuCACCCG-GUACGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 150608 0.82 0.191722
Target:  5'- aCGUCCCC--GUGGGCUGuUGCGGCGGCu -3'
miRNA:   3'- -GUAGGGGuuCACCCGGU-ACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 58728 0.79 0.26759
Target:  5'- cCGUCUCCAGGc-GGCgGUGCAGCAGCc -3'
miRNA:   3'- -GUAGGGGUUCacCCGgUACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 107316 0.78 0.313865
Target:  5'- aAUCgCCgCGGGuUGGGCCccGCAGCAGCg -3'
miRNA:   3'- gUAG-GG-GUUC-ACCCGGuaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 82410 0.78 0.313865
Target:  5'- cCGUCCCC---UGGGCCAUGgAGCAGa -3'
miRNA:   3'- -GUAGGGGuucACCCGGUACgUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 86330 0.76 0.432378
Target:  5'- aCGUCagCCGGGUGgugaGGCCGUGCAGCgAGCc -3'
miRNA:   3'- -GUAGg-GGUUCAC----CCGGUACGUCG-UCG- -5'
14094 3' -57.1 NC_003521.1 + 50821 0.74 0.505327
Target:  5'- uGUCCCCGguGGUGGgaGCgGUGaCGGCGGCu -3'
miRNA:   3'- gUAGGGGU--UCACC--CGgUAC-GUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 137233 0.74 0.505327
Target:  5'- gAUCCCCcgcgcaccGGccgGGGCCGacgGCGGCAGCg -3'
miRNA:   3'- gUAGGGGu-------UCa--CCCGGUa--CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 136608 0.74 0.534041
Target:  5'- aCGUCCUCGc-UGGGC--UGCAGCAGCa -3'
miRNA:   3'- -GUAGGGGUucACCCGguACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 152146 0.73 0.543744
Target:  5'- uGUCCCCGAGccGGGCCGccgGCccaccgaccuGGCGGCc -3'
miRNA:   3'- gUAGGGGUUCa-CCCGGUa--CG----------UCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 107168 0.73 0.563314
Target:  5'- -uUCUCCAGGcgGGGCagguccaGCAGCAGCa -3'
miRNA:   3'- guAGGGGUUCa-CCCGgua----CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 169520 0.73 0.582076
Target:  5'- gCcgCCCCAGGUgcuggugccccagGGGcCCGUGCcGCGGCc -3'
miRNA:   3'- -GuaGGGGUUCA-------------CCC-GGUACGuCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 31687 0.73 0.583067
Target:  5'- -uUCUCCAggugaaAGUGGGgCG-GCGGCAGCa -3'
miRNA:   3'- guAGGGGU------UCACCCgGUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 11925 0.72 0.602954
Target:  5'- aGUCCCCcAGccGGGCCcgGCuGguGCu -3'
miRNA:   3'- gUAGGGGuUCa-CCCGGuaCGuCguCG- -5'
14094 3' -57.1 NC_003521.1 + 149959 0.72 0.602954
Target:  5'- cCGUCCCCcuc--GGCCGUggucaGCAGCAGCa -3'
miRNA:   3'- -GUAGGGGuucacCCGGUA-----CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 133045 0.72 0.602954
Target:  5'- --cCCCCAccacAGUGGcuCCA-GCAGCAGCa -3'
miRNA:   3'- guaGGGGU----UCACCc-GGUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 233786 0.72 0.602954
Target:  5'- gCGUCUCC-GGUGGucuuucuaCGUGCAGCAGCg -3'
miRNA:   3'- -GUAGGGGuUCACCcg------GUACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 186605 0.72 0.612933
Target:  5'- gAUCCCUucGacaaGGGCUAcGCGGCGGCg -3'
miRNA:   3'- gUAGGGGuuCa---CCCGGUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 196386 0.72 0.642921
Target:  5'- gCAUCgCCGAGccgccgucacgaUGGGCgG-GCAGCGGCa -3'
miRNA:   3'- -GUAGgGGUUC------------ACCCGgUaCGUCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.