miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 3' -57.1 NC_003521.1 + 123114 0.69 0.781976
Target:  5'- cCGUCCUCGcc-GGGCCGcuguacgaaguacgGCAGCGGCg -3'
miRNA:   3'- -GUAGGGGUucaCCCGGUa-------------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 116815 0.71 0.672836
Target:  5'- --aCCCCGAcUGGGUgcUGCAGCGGUu -3'
miRNA:   3'- guaGGGGUUcACCCGguACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 223394 0.71 0.672836
Target:  5'- --gCCCCGAcGcGGGCCGUGUGGCgccccGGCg -3'
miRNA:   3'- guaGGGGUU-CaCCCGGUACGUCG-----UCG- -5'
14094 3' -57.1 NC_003521.1 + 195946 0.71 0.672836
Target:  5'- cCGUCCUgc-GUGGGCCAcagGCucuGGCAGCg -3'
miRNA:   3'- -GUAGGGguuCACCCGGUa--CG---UCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 47425 0.71 0.682755
Target:  5'- gCAUCgCUCGGGccaGGGCaCAUGCAGCcgGGCg -3'
miRNA:   3'- -GUAG-GGGUUCa--CCCG-GUACGUCG--UCG- -5'
14094 3' -57.1 NC_003521.1 + 78130 0.7 0.731583
Target:  5'- ---aCCUuGGUGGGCgCGUuaGCGGCGGCg -3'
miRNA:   3'- guagGGGuUCACCCG-GUA--CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 82350 0.7 0.759962
Target:  5'- gGUCCUCcuuGGUGGGCUugaccgagGUGCAGUGGa -3'
miRNA:   3'- gUAGGGGu--UCACCCGG--------UACGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 191932 0.7 0.759962
Target:  5'- gGUCCCCg---GGGCCcUG-GGCAGCg -3'
miRNA:   3'- gUAGGGGuucaCCCGGuACgUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 30076 0.69 0.769216
Target:  5'- cCGUCCCCGcc--GGCCGcucacgGUAGCAGCg -3'
miRNA:   3'- -GUAGGGGUucacCCGGUa-----CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 16750 0.71 0.662885
Target:  5'- gAUCUCCGuGGUGcgcuucGCCAUGCAGCAGg -3'
miRNA:   3'- gUAGGGGU-UCACc-----CGGUACGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 196386 0.72 0.642921
Target:  5'- gCAUCgCCGAGccgccgucacgaUGGGCgG-GCAGCGGCa -3'
miRNA:   3'- -GUAGgGGUUC------------ACCCGgUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 149959 0.72 0.602954
Target:  5'- cCGUCCCCcuc--GGCCGUggucaGCAGCAGCa -3'
miRNA:   3'- -GUAGGGGuucacCCGGUA-----CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 150608 0.82 0.191722
Target:  5'- aCGUCCCC--GUGGGCUGuUGCGGCGGCu -3'
miRNA:   3'- -GUAGGGGuuCACCCGGU-ACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 58728 0.79 0.26759
Target:  5'- cCGUCUCCAGGc-GGCgGUGCAGCAGCc -3'
miRNA:   3'- -GUAGGGGUUCacCCGgUACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 82410 0.78 0.313865
Target:  5'- cCGUCCCC---UGGGCCAUGgAGCAGa -3'
miRNA:   3'- -GUAGGGGuucACCCGGUACgUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 86330 0.76 0.432378
Target:  5'- aCGUCagCCGGGUGgugaGGCCGUGCAGCgAGCc -3'
miRNA:   3'- -GUAGg-GGUUCAC----CCGGUACGUCG-UCG- -5'
14094 3' -57.1 NC_003521.1 + 137233 0.74 0.505327
Target:  5'- gAUCCCCcgcgcaccGGccgGGGCCGacgGCGGCAGCg -3'
miRNA:   3'- gUAGGGGu-------UCa--CCCGGUa--CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 31687 0.73 0.583067
Target:  5'- -uUCUCCAggugaaAGUGGGgCG-GCGGCAGCa -3'
miRNA:   3'- guAGGGGU------UCACCCgGUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 233786 0.72 0.602954
Target:  5'- gCGUCUCC-GGUGGucuuucuaCGUGCAGCAGCg -3'
miRNA:   3'- -GUAGGGGuUCACCcg------GUACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 133045 0.72 0.602954
Target:  5'- --cCCCCAccacAGUGGcuCCA-GCAGCAGCa -3'
miRNA:   3'- guaGGGGU----UCACCc-GGUaCGUCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.