miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 3' -57.1 NC_003521.1 + 320 0.67 0.88902
Target:  5'- gCGUCCCCAGgcGUGcaaacGGCCAaccaagcgugagcUGCcggaGGCGGCg -3'
miRNA:   3'- -GUAGGGGUU--CAC-----CCGGU-------------ACG----UCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 5489 0.66 0.924817
Target:  5'- -uUCCCCccuuAGaucuGGCCGUcucggcaggaguaGCAGCAGCg -3'
miRNA:   3'- guAGGGGu---UCac--CCGGUA-------------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 7948 0.66 0.930497
Target:  5'- uCAUCCuCCAgaucgccgcGGUGucgcGGCCGggaggguccGCGGCGGCg -3'
miRNA:   3'- -GUAGG-GGU---------UCAC----CCGGUa--------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 11925 0.72 0.602954
Target:  5'- aGUCCCCcAGccGGGCCcgGCuGguGCu -3'
miRNA:   3'- gUAGGGGuUCa-CCCGGuaCGuCguCG- -5'
14094 3' -57.1 NC_003521.1 + 12809 0.67 0.876034
Target:  5'- --aUCUCGAGUGcGCCAagcaguacugGCAGCAGCu -3'
miRNA:   3'- guaGGGGUUCACcCGGUa---------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 13973 0.68 0.846286
Target:  5'- --gCCCUGA-UGGGCCugcccggcGCGGCGGCg -3'
miRNA:   3'- guaGGGGUUcACCCGGua------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 14422 0.66 0.914358
Target:  5'- gAUCgCCUAucgugacguGGUGcacacGGCCcUGCGGCGGCg -3'
miRNA:   3'- gUAG-GGGU---------UCAC-----CCGGuACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 15742 0.71 0.662885
Target:  5'- -uUCCUgCAGGUGcGCCcggGCAGCAGCa -3'
miRNA:   3'- guAGGG-GUUCACcCGGua-CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 16750 0.71 0.662885
Target:  5'- gAUCUCCGuGGUGcgcuucGCCAUGCAGCAGg -3'
miRNA:   3'- gUAGGGGU-UCACc-----CGGUACGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 16964 0.67 0.896183
Target:  5'- gGUCCCgAGGgacaGCCGcaGCAGCAGCc -3'
miRNA:   3'- gUAGGGgUUCacc-CGGUa-CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 17341 0.68 0.854016
Target:  5'- uCcgCCCCAccucccGGGCCGUgacgccggcGCGGCGGCc -3'
miRNA:   3'- -GuaGGGGUuca---CCCGGUA---------CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 17479 0.69 0.778355
Target:  5'- gCcgCCgCCGAGgccugGGGCaccuaucUGCGGCAGCg -3'
miRNA:   3'- -GuaGG-GGUUCa----CCCGgu-----ACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 18914 0.66 0.919965
Target:  5'- --gCCCCGaagGGUGGcGCCGcGCGcCGGCa -3'
miRNA:   3'- guaGGGGU---UCACC-CGGUaCGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 22388 0.69 0.802381
Target:  5'- uGUCCUCcguGGUGccgccgcugucgcuGGCCAUGCugcGCGGCg -3'
miRNA:   3'- gUAGGGGu--UCAC--------------CCGGUACGu--CGUCG- -5'
14094 3' -57.1 NC_003521.1 + 28453 0.66 0.908524
Target:  5'- uCGUCgCCAuccAGccuUGGGCgGUGCAcCAGCg -3'
miRNA:   3'- -GUAGgGGU---UC---ACCCGgUACGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 29233 0.66 0.919965
Target:  5'- gAUCCUCuacUGGGCCuccaGCcGCGGCg -3'
miRNA:   3'- gUAGGGGuucACCCGGua--CGuCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 30076 0.69 0.769216
Target:  5'- cCGUCCCCGcc--GGCCGcucacgGUAGCAGCg -3'
miRNA:   3'- -GUAGGGGUucacCCGGUa-----CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 30883 0.67 0.896183
Target:  5'- -uUCCgcguCCGAGaGGGCCGagcugaacUGCGGCAGg -3'
miRNA:   3'- guAGG----GGUUCaCCCGGU--------ACGUCGUCg -5'
14094 3' -57.1 NC_003521.1 + 31285 0.67 0.861555
Target:  5'- --aCCCCGcc-GGGCgCAUaaccGCGGCAGCg -3'
miRNA:   3'- guaGGGGUucaCCCG-GUA----CGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 31687 0.73 0.583067
Target:  5'- -uUCUCCAggugaaAGUGGGgCG-GCGGCAGCa -3'
miRNA:   3'- guAGGGGU------UCACCCgGUaCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.