miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14100 5' -59.1 NC_003521.1 + 197371 0.65 0.894841
Target:  5'- gGCCCGCUgugagagUUCCagGGcCGCCGcCGCCUc- -3'
miRNA:   3'- -CGGGUGA-------AAGG--CC-GCGGUaGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 91415 0.66 0.861754
Target:  5'- gGCCCACagggcgaCCGuGCGCaugCGCCUGGg -3'
miRNA:   3'- -CGGGUGaaa----GGC-CGCGguaGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 111693 0.66 0.889124
Target:  5'- -aCCACgcagUCGGaCGCCGaCGUCCAGu -3'
miRNA:   3'- cgGGUGaaa-GGCC-GCGGUaGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 192398 0.66 0.882578
Target:  5'- aGCUgACggugcugUUCCaGCGCC-UCGCCgAGa -3'
miRNA:   3'- -CGGgUGa------AAGGcCGCGGuAGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 56033 0.66 0.868889
Target:  5'- cGgCCACcagggcgUCCaGGCGCgCGUUGcCCCAGa -3'
miRNA:   3'- -CgGGUGaa-----AGG-CCGCG-GUAGC-GGGUC- -5'
14100 5' -59.1 NC_003521.1 + 223759 0.66 0.868889
Target:  5'- uCCCACUcgUCguccucgcuguCGGCGCCGUuacCGCCguGg -3'
miRNA:   3'- cGGGUGAa-AG-----------GCCGCGGUA---GCGGguC- -5'
14100 5' -59.1 NC_003521.1 + 229256 0.66 0.882578
Target:  5'- cCCCGCagagUCCGGCGCaCGacggCGCCgGa -3'
miRNA:   3'- cGGGUGaa--AGGCCGCG-GUa---GCGGgUc -5'
14100 5' -59.1 NC_003521.1 + 69930 0.66 0.868889
Target:  5'- cGCCUGCUUcgcgacgCCGGaCGCCugaccacccgCGCCCGc -3'
miRNA:   3'- -CGGGUGAAa------GGCC-GCGGua--------GCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 45650 0.66 0.875832
Target:  5'- gGCuCCGCggggUCCGGCGCaCAccCGCUauCAGg -3'
miRNA:   3'- -CG-GGUGaa--AGGCCGCG-GUa-GCGG--GUC- -5'
14100 5' -59.1 NC_003521.1 + 172760 0.66 0.868889
Target:  5'- gGCCCgGCaUUCUGGCuGCCAccgggggCGCCgCGGa -3'
miRNA:   3'- -CGGG-UGaAAGGCCG-CGGUa------GCGG-GUC- -5'
14100 5' -59.1 NC_003521.1 + 239910 0.66 0.868889
Target:  5'- aGCCaugaACg--CCGuGCGCCAgauggUGCCCAu -3'
miRNA:   3'- -CGGg---UGaaaGGC-CGCGGUa----GCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 103943 0.66 0.882578
Target:  5'- -aCCGCgaacaCCGGCGCCAccCGCCgCGa -3'
miRNA:   3'- cgGGUGaaa--GGCCGCGGUa-GCGG-GUc -5'
14100 5' -59.1 NC_003521.1 + 5691 0.66 0.875832
Target:  5'- cGUCCGCggggaaCgGGCGCCGUCaCCgGGg -3'
miRNA:   3'- -CGGGUGaaa---GgCCGCGGUAGcGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 154755 0.66 0.882578
Target:  5'- gGCCUACUggCCGGU--CAUCGCCg-- -3'
miRNA:   3'- -CGGGUGAaaGGCCGcgGUAGCGGguc -5'
14100 5' -59.1 NC_003521.1 + 17096 0.66 0.889124
Target:  5'- uCCCGCca-CCGGaccCGCCGUCGuaCCCGGc -3'
miRNA:   3'- cGGGUGaaaGGCC---GCGGUAGC--GGGUC- -5'
14100 5' -59.1 NC_003521.1 + 141501 0.66 0.889124
Target:  5'- uGCCCAC---CUGGCccGCC-UCGuCCCGGa -3'
miRNA:   3'- -CGGGUGaaaGGCCG--CGGuAGC-GGGUC- -5'
14100 5' -59.1 NC_003521.1 + 89708 0.66 0.889124
Target:  5'- cCCCAUaUUCCcccCGCCAUCcCCCAGc -3'
miRNA:   3'- cGGGUGaAAGGcc-GCGGUAGcGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 200914 0.66 0.882578
Target:  5'- aGCCagCGCUUUCC-GCGCC--CGCCgGGa -3'
miRNA:   3'- -CGG--GUGAAAGGcCGCGGuaGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 117616 0.66 0.882578
Target:  5'- cGCCCcCguccuacCCGGCGCCGUaugcgGCCUAc -3'
miRNA:   3'- -CGGGuGaaa----GGCCGCGGUAg----CGGGUc -5'
14100 5' -59.1 NC_003521.1 + 187581 0.66 0.887831
Target:  5'- aGUCCGCgggggcuucgCCGGCgGUCGcuUCGCCCGc -3'
miRNA:   3'- -CGGGUGaaa-------GGCCG-CGGU--AGCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.