miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14100 5' -59.1 NC_003521.1 + 129613 1.09 0.00234
Target:  5'- cGCCCACUUUCCGGCGCCAUCGCCCAGc -3'
miRNA:   3'- -CGGGUGAAAGGCCGCGGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 129638 0.85 0.095052
Target:  5'- nGCCCACcgUCCgcGGCGCCGUCGCCgGGg -3'
miRNA:   3'- -CGGGUGaaAGG--CCGCGGUAGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 162953 0.85 0.105073
Target:  5'- uUCCACUacgaggCCGGCGCCAUCGCCCGu -3'
miRNA:   3'- cGGGUGAaa----GGCCGCGGUAGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 118089 0.79 0.238637
Target:  5'- -gCCACUcggCGGCGCCGUCGCCCAc -3'
miRNA:   3'- cgGGUGAaagGCCGCGGUAGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 141800 0.78 0.267404
Target:  5'- gGCCCGgag-CCGGCGCCAUCGUCUAc -3'
miRNA:   3'- -CGGGUgaaaGGCCGCGGUAGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 202609 0.76 0.362671
Target:  5'- gGCCC-CUacaUCGGCGCCAUCGUCCGc -3'
miRNA:   3'- -CGGGuGAaa-GGCCGCGGUAGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 43863 0.75 0.378064
Target:  5'- cGCCC-Cgg-CCGGCucccggGCCGUCGCCCAc -3'
miRNA:   3'- -CGGGuGaaaGGCCG------CGGUAGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 83917 0.75 0.41842
Target:  5'- cCCCGC--UCCGGC-CCGUCGCCCc- -3'
miRNA:   3'- cGGGUGaaAGGCCGcGGUAGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 224024 0.74 0.443855
Target:  5'- gGCCCgGCggucggggCgGGCGCCGUCGCCCc- -3'
miRNA:   3'- -CGGG-UGaaa-----GgCCGCGGUAGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 210921 0.74 0.443855
Target:  5'- cGgCCACgggucgUCGGuCGUCGUCGCCCAGg -3'
miRNA:   3'- -CgGGUGaaa---GGCC-GCGGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 234948 0.74 0.443856
Target:  5'- cCCCGCUgacucaucguUUCCuGUGCCcgCGCCCGGa -3'
miRNA:   3'- cGGGUGA----------AAGGcCGCGGuaGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 47607 0.74 0.461287
Target:  5'- cGCCCgACU---UGGcCGCCAUCGUCCAGg -3'
miRNA:   3'- -CGGG-UGAaagGCC-GCGGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 11553 0.74 0.470137
Target:  5'- -gCUACgccUCCGGCGCCGUCGUgcgCCGGa -3'
miRNA:   3'- cgGGUGaa-AGGCCGCGGUAGCG---GGUC- -5'
14100 5' -59.1 NC_003521.1 + 122101 0.73 0.479073
Target:  5'- aGCCCGUg--CCGGUGCCGcgccccUCGCCCAu -3'
miRNA:   3'- -CGGGUGaaaGGCCGCGGU------AGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 59556 0.73 0.497189
Target:  5'- uCCCGCg-UCCGGCGCCGcggggguuUCGUCCGa -3'
miRNA:   3'- cGGGUGaaAGGCCGCGGU--------AGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 145287 0.73 0.506362
Target:  5'- aGCUCGCgcgCCGGCGUC-UCGCCgGGc -3'
miRNA:   3'- -CGGGUGaaaGGCCGCGGuAGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 138028 0.73 0.524919
Target:  5'- cGCCCgaGCUggcggccgCCGGCGCCGucaUCGCgCAGc -3'
miRNA:   3'- -CGGG--UGAaa------GGCCGCGGU---AGCGgGUC- -5'
14100 5' -59.1 NC_003521.1 + 225516 0.72 0.543728
Target:  5'- aCCCGCU---CGGCGCCGUCGCgCGu -3'
miRNA:   3'- cGGGUGAaagGCCGCGGUAGCGgGUc -5'
14100 5' -59.1 NC_003521.1 + 32883 0.72 0.562752
Target:  5'- cGCCCGCgccgCCGGUGCUGcCGCCguGc -3'
miRNA:   3'- -CGGGUGaaa-GGCCGCGGUaGCGGguC- -5'
14100 5' -59.1 NC_003521.1 + 24185 0.72 0.562752
Target:  5'- cUUCGCUUUcCCGGCGUCGgcgCGCCCGc -3'
miRNA:   3'- cGGGUGAAA-GGCCGCGGUa--GCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.