miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14100 5' -59.1 NC_003521.1 + 74170 0.7 0.678887
Target:  5'- -gCCGCUggCCGacuGCGCCGcggCGCCCGGc -3'
miRNA:   3'- cgGGUGAaaGGC---CGCGGUa--GCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 223472 0.71 0.610976
Target:  5'- -gCCGCg--CCGGCGUCAcgGCCCGGg -3'
miRNA:   3'- cgGGUGaaaGGCCGCGGUagCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 115058 0.71 0.630408
Target:  5'- gGUCCACg--UCGGagaaGCCcgacGUCGCCCAGa -3'
miRNA:   3'- -CGGGUGaaaGGCCg---CGG----UAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 118212 0.71 0.64013
Target:  5'- aGCgCGCgg-CCGcCGCCGUCGCCgGGg -3'
miRNA:   3'- -CGgGUGaaaGGCcGCGGUAGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 34204 0.71 0.643045
Target:  5'- gGCCCACcagggcggcguagaCGGCGCCcguGUCGCCgCAGa -3'
miRNA:   3'- -CGGGUGaaag----------GCCGCGG---UAGCGG-GUC- -5'
14100 5' -59.1 NC_003521.1 + 72694 0.7 0.649845
Target:  5'- cGUCCACcca-CGGCGCUGUCGUCCu- -3'
miRNA:   3'- -CGGGUGaaagGCCGCGGUAGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 119790 0.7 0.659548
Target:  5'- gGUCCACcUUCCGGCGCCAgcggggCGacaCGGu -3'
miRNA:   3'- -CGGGUGaAAGGCCGCGGUa-----GCgg-GUC- -5'
14100 5' -59.1 NC_003521.1 + 211161 0.7 0.659548
Target:  5'- cGCCCAUgguguuUUUCggaGGCGCCG-CGCUCGGu -3'
miRNA:   3'- -CGGGUG------AAAGg--CCGCGGUaGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 194151 0.7 0.678887
Target:  5'- cUCCACcucggCgGGCGguuCCAUCGCCCGGg -3'
miRNA:   3'- cGGGUGaaa--GgCCGC---GGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 228079 0.71 0.610976
Target:  5'- aGCUCACg-UCCgaGGCGCCGgaaaccUCGUCCAGg -3'
miRNA:   3'- -CGGGUGaaAGG--CCGCGGU------AGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 125743 0.71 0.605155
Target:  5'- aGCCCACUUcUCgCGGUgccucguguuguacaGCaCGUCGCUCAGg -3'
miRNA:   3'- -CGGGUGAA-AG-GCCG---------------CG-GUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 88734 0.71 0.591601
Target:  5'- cCUCGCagagCCGGCGCaCGUCGCCguGg -3'
miRNA:   3'- cGGGUGaaa-GGCCGCG-GUAGCGGguC- -5'
14100 5' -59.1 NC_003521.1 + 43863 0.75 0.378064
Target:  5'- cGCCC-Cgg-CCGGCucccggGCCGUCGCCCAc -3'
miRNA:   3'- -CGGGuGaaaGGCCG------CGGUAGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 83917 0.75 0.41842
Target:  5'- cCCCGC--UCCGGC-CCGUCGCCCc- -3'
miRNA:   3'- cGGGUGaaAGGCCGcGGUAGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 210921 0.74 0.443855
Target:  5'- cGgCCACgggucgUCGGuCGUCGUCGCCCAGg -3'
miRNA:   3'- -CgGGUGaaa---GGCC-GCGGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 224024 0.74 0.443855
Target:  5'- gGCCCgGCggucggggCgGGCGCCGUCGCCCc- -3'
miRNA:   3'- -CGGG-UGaaa-----GgCCGCGGUAGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 59556 0.73 0.497189
Target:  5'- uCCCGCg-UCCGGCGCCGcggggguuUCGUCCGa -3'
miRNA:   3'- cGGGUGaaAGGCCGCGGU--------AGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 145287 0.73 0.506362
Target:  5'- aGCUCGCgcgCCGGCGUC-UCGCCgGGc -3'
miRNA:   3'- -CGGGUGaaaGGCCGCGGuAGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 225516 0.72 0.543728
Target:  5'- aCCCGCU---CGGCGCCGUCGCgCGu -3'
miRNA:   3'- cGGGUGAaagGCCGCGGUAGCGgGUc -5'
14100 5' -59.1 NC_003521.1 + 32883 0.72 0.562752
Target:  5'- cGCCCGCgccgCCGGUGCUGcCGCCguGc -3'
miRNA:   3'- -CGGGUGaaa-GGCCGCGGUaGCGGguC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.