miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14100 5' -59.1 NC_003521.1 + 687 0.66 0.882578
Target:  5'- aGCCagCGCUUUCC-GCGCC--CGCCgGGa -3'
miRNA:   3'- -CGG--GUGAAAGGcCGCGGuaGCGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 759 0.67 0.823388
Target:  5'- cCCCACg--CCggaggccaagcaGGCGCCAUcggcggaggacCGCCCGGc -3'
miRNA:   3'- cGGGUGaaaGG------------CCGCGGUA-----------GCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 4333 0.68 0.781111
Target:  5'- cGUCCAUgc-CUGGCGCCAcCGCCg-- -3'
miRNA:   3'- -CGGGUGaaaGGCCGCGGUaGCGGguc -5'
14100 5' -59.1 NC_003521.1 + 4664 0.69 0.726495
Target:  5'- cGUCCGCUaggucccgCCGGCGaCGUCGCgCGGu -3'
miRNA:   3'- -CGGGUGAaa------GGCCGCgGUAGCGgGUC- -5'
14100 5' -59.1 NC_003521.1 + 5691 0.66 0.875832
Target:  5'- cGUCCGCggggaaCgGGCGCCGUCaCCgGGg -3'
miRNA:   3'- -CGGGUGaaa---GgCCGCGGUAGcGGgUC- -5'
14100 5' -59.1 NC_003521.1 + 11553 0.74 0.470137
Target:  5'- -gCUACgccUCCGGCGCCGUCGUgcgCCGGa -3'
miRNA:   3'- cgGGUGaa-AGGCCGCGGUAGCG---GGUC- -5'
14100 5' -59.1 NC_003521.1 + 17096 0.66 0.889124
Target:  5'- uCCCGCca-CCGGaccCGCCGUCGuaCCCGGc -3'
miRNA:   3'- cGGGUGaaaGGCC---GCGGUAGC--GGGUC- -5'
14100 5' -59.1 NC_003521.1 + 22344 0.72 0.562752
Target:  5'- uCCCGacgUCCGGgGCCAcugCGCCCAc -3'
miRNA:   3'- cGGGUgaaAGGCCgCGGUa--GCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 22731 0.69 0.745079
Target:  5'- cGCCCucauCgucaCCGGCGCCGcCGCCUc- -3'
miRNA:   3'- -CGGGu---Gaaa-GGCCGCGGUaGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 24185 0.72 0.562752
Target:  5'- cUUCGCUUUcCCGGCGUCGgcgCGCCCGc -3'
miRNA:   3'- cGGGUGAAA-GGCCGCGGUa--GCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 24631 0.66 0.868889
Target:  5'- cCCCGCg--CCGGUGCuCAgCGCCUu- -3'
miRNA:   3'- cGGGUGaaaGGCCGCG-GUaGCGGGuc -5'
14100 5' -59.1 NC_003521.1 + 25249 0.66 0.861754
Target:  5'- aGCCCGgUUgaCGGCGCgGUCccugGCCUGGg -3'
miRNA:   3'- -CGGGUgAAagGCCGCGgUAG----CGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 27533 0.68 0.762403
Target:  5'- cGCCCACgg--UGGCGuagacggucuccaCCGUCGUCCGGg -3'
miRNA:   3'- -CGGGUGaaagGCCGC-------------GGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 27807 0.7 0.649846
Target:  5'- gGCCgGCUcgcCCGGCGCCAUgGUaCAGa -3'
miRNA:   3'- -CGGgUGAaa-GGCCGCGGUAgCGgGUC- -5'
14100 5' -59.1 NC_003521.1 + 28168 0.67 0.854432
Target:  5'- uGCCCGCgacgcccucUUCgGGUcgcaugGCCAagUCGCCCAa -3'
miRNA:   3'- -CGGGUGa--------AAGgCCG------CGGU--AGCGGGUc -5'
14100 5' -59.1 NC_003521.1 + 28534 0.67 0.8314
Target:  5'- uGCCCAUg--CCGGC-CU-UCGCCCuGg -3'
miRNA:   3'- -CGGGUGaaaGGCCGcGGuAGCGGGuC- -5'
14100 5' -59.1 NC_003521.1 + 32883 0.72 0.562752
Target:  5'- cGCCCGCgccgCCGGUGCUGcCGCCguGc -3'
miRNA:   3'- -CGGGUGaaa-GGCCGCGGUaGCGGguC- -5'
14100 5' -59.1 NC_003521.1 + 32909 0.68 0.806899
Target:  5'- nGCCCGCcg-CCcccggcguagguGGCGCCGgagaGCCCAa -3'
miRNA:   3'- -CGGGUGaaaGG------------CCGCGGUag--CGGGUc -5'
14100 5' -59.1 NC_003521.1 + 33035 0.69 0.735827
Target:  5'- -aCCGCgagCUGuaGCCGUCGUCCGGg -3'
miRNA:   3'- cgGGUGaaaGGCcgCGGUAGCGGGUC- -5'
14100 5' -59.1 NC_003521.1 + 34204 0.71 0.643045
Target:  5'- gGCCCACcagggcggcguagaCGGCGCCcguGUCGCCgCAGa -3'
miRNA:   3'- -CGGGUGaaag----------GCCGCGG---UAGCGG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.