miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 3404 0.7 0.792208
Target:  5'- aCGCCGGcAUCCGGGGAu-GGGGCc-- -3'
miRNA:   3'- -GCGGCCcUAGGCUCCUcuUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 155182 0.7 0.792208
Target:  5'- gGCCGcGGcugCCGGGGGGGAGGuGCAc- -3'
miRNA:   3'- gCGGC-CCua-GGCUCCUCUUCC-UGUac -5'
14101 3' -56.7 NC_003521.1 + 175915 0.7 0.800859
Target:  5'- uGCUGGGGaccuggcCCGAGGAGccggagGAGGACAg- -3'
miRNA:   3'- gCGGCCCUa------GGCUCCUC------UUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 123265 0.7 0.800859
Target:  5'- aCGCCGGGAUCguAGGcuccGAAGuGACGUGc -3'
miRNA:   3'- -GCGGCCCUAGgcUCCu---CUUC-CUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 156695 0.7 0.807679
Target:  5'- gCGCuCGGGGaaaaggugcuggCCGGGGAGGAGcGCAUGu -3'
miRNA:   3'- -GCG-GCCCUa-----------GGCUCCUCUUCcUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 148378 0.7 0.80937
Target:  5'- aGCCgagcGGGGUgCGGGGAGGcuGGGGgGUGa -3'
miRNA:   3'- gCGG----CCCUAgGCUCCUCU--UCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 658 0.7 0.817732
Target:  5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3'
miRNA:   3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 22160 0.7 0.817732
Target:  5'- -aCCGGGAgaCGGuGGAGAGGGACGa- -3'
miRNA:   3'- gcGGCCCUagGCU-CCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 40979 0.7 0.817732
Target:  5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3'
miRNA:   3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 240562 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 40335 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 13 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 13894 0.69 0.833983
Target:  5'- uCGCCGGGGggcCCGGcgcGGAGggGGcCGc- -3'
miRNA:   3'- -GCGGCCCUa--GGCU---CCUCuuCCuGUac -5'
14101 3' -56.7 NC_003521.1 + 71445 0.69 0.841859
Target:  5'- gGCgGGGAUCgCGGGG-GAA-GACAUGc -3'
miRNA:   3'- gCGgCCCUAG-GCUCCuCUUcCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 172418 0.69 0.841859
Target:  5'- uCGCCgcGGGAcCCGAGGcGGAGGAgGa- -3'
miRNA:   3'- -GCGG--CCCUaGGCUCCuCUUCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 120550 0.69 0.863683
Target:  5'- gGCCGGcGGUCCcGGGGGAgcgcccgGGGAUAa- -3'
miRNA:   3'- gCGGCC-CUAGGcUCCUCU-------UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 19080 0.68 0.871545
Target:  5'- aGCUGGGccgugagGAGGAGggGGACGg- -3'
miRNA:   3'- gCGGCCCuagg---CUCCUCuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 149430 0.68 0.871545
Target:  5'- gGCCGGGAUuuGGGucGggGGuCcgGg -3'
miRNA:   3'- gCGGCCCUAggCUCcuCuuCCuGuaC- -5'
14101 3' -56.7 NC_003521.1 + 36145 0.68 0.871545
Target:  5'- uCGUCGacccugcCCGAGGAGGAGGACAc- -3'
miRNA:   3'- -GCGGCccua---GGCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 186535 0.68 0.871545
Target:  5'- aGCgGGGGcUCCGuGGGAGGcAGGGCcgGc -3'
miRNA:   3'- gCGgCCCU-AGGC-UCCUCU-UCCUGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.