miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14101 3' -56.7 NC_003521.1 + 129472 1.09 0.004403
Target:  5'- gCGCCGGGAUCCGAGGAGAAGGACAUGg -3'
miRNA:   3'- -GCGGCCCUAGGCUCCUCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 40335 0.7 0.825939
Target:  5'- cCGCUGcGGGUcCCGGGGGGuGGGGGgGUGu -3'
miRNA:   3'- -GCGGC-CCUA-GGCUCCUC-UUCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 172418 0.69 0.841859
Target:  5'- uCGCCgcGGGAcCCGAGGcGGAGGAgGa- -3'
miRNA:   3'- -GCGG--CCCUaGGCUCCuCUUCCUgUac -5'
14101 3' -56.7 NC_003521.1 + 151111 0.66 0.956983
Target:  5'- cCGCUGGGGgauggCGGGGGGAauaugGGGACu-- -3'
miRNA:   3'- -GCGGCCCUag---GCUCCUCU-----UCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 90874 0.76 0.496715
Target:  5'- gGCCGaGGGggaCGGGGAGggGGACGa- -3'
miRNA:   3'- gCGGC-CCUag-GCUCCUCuuCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 116965 0.74 0.611697
Target:  5'- aCGgCGGGAaaCGAGGAGAAGGAa--- -3'
miRNA:   3'- -GCgGCCCUagGCUCCUCUUCCUguac -5'
14101 3' -56.7 NC_003521.1 + 48923 0.72 0.718881
Target:  5'- aGCCGGuGUCCGu---GAAGGACGUGg -3'
miRNA:   3'- gCGGCCcUAGGCuccuCUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 29974 0.72 0.718881
Target:  5'- aCGCCGGuGGUCUGGacGGAGGgagGGGACGa- -3'
miRNA:   3'- -GCGGCC-CUAGGCU--CCUCU---UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 155182 0.7 0.792208
Target:  5'- gGCCGcGGcugCCGGGGGGGAGGuGCAc- -3'
miRNA:   3'- gCGGC-CCua-GGCUCCUCUUCC-UGUac -5'
14101 3' -56.7 NC_003521.1 + 40979 0.7 0.817732
Target:  5'- -cCCGGGGggacgCgGAGGAGggGGGCu-- -3'
miRNA:   3'- gcGGCCCUa----GgCUCCUCuuCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 156695 0.7 0.807679
Target:  5'- gCGCuCGGGGaaaaggugcuggCCGGGGAGGAGcGCAUGu -3'
miRNA:   3'- -GCG-GCCCUa-----------GGCUCCUCUUCcUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 7975 0.71 0.774515
Target:  5'- gGCCGGGAgggUCCGcggcggcggGGGAGGuaccGGGGCAg- -3'
miRNA:   3'- gCGGCCCU---AGGC---------UCCUCU----UCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 139646 0.85 0.161279
Target:  5'- cCGCCGGGcgcggacgccGUCUGAGGAGAGGGACGc- -3'
miRNA:   3'- -GCGGCCC----------UAGGCUCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 148378 0.7 0.80937
Target:  5'- aGCCgagcGGGGUgCGGGGAGGcuGGGGgGUGa -3'
miRNA:   3'- gCGG----CCCUAgGCUCCUCU--UCCUgUAC- -5'
14101 3' -56.7 NC_003521.1 + 16815 0.78 0.376511
Target:  5'- cCGCCGGGcccgccgcugCCGcAGGAGGAGGACAa- -3'
miRNA:   3'- -GCGGCCCua--------GGC-UCCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 164450 0.71 0.765488
Target:  5'- gCGCCGcGGGcCUGAGcauGAAGGGCGUGg -3'
miRNA:   3'- -GCGGC-CCUaGGCUCcu-CUUCCUGUAC- -5'
14101 3' -56.7 NC_003521.1 + 22160 0.7 0.817732
Target:  5'- -aCCGGGAgaCGGuGGAGAGGGACGa- -3'
miRNA:   3'- gcGGCCCUagGCU-CCUCUUCCUGUac -5'
14101 3' -56.7 NC_003521.1 + 13894 0.69 0.833983
Target:  5'- uCGCCGGGGggcCCGGcgcGGAGggGGcCGc- -3'
miRNA:   3'- -GCGGCCCUa--GGCU---CCUCuuCCuGUac -5'
14101 3' -56.7 NC_003521.1 + 119361 0.76 0.460459
Target:  5'- uCGCUGGGcUCCGAcgaGGAGGAGGACc-- -3'
miRNA:   3'- -GCGGCCCuAGGCU---CCUCUUCCUGuac -5'
14101 3' -56.7 NC_003521.1 + 116991 0.72 0.709321
Target:  5'- aGCgGGGGaa-GAGGAGGAGGACGa- -3'
miRNA:   3'- gCGgCCCUaggCUCCUCUUCCUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.