miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 5' -56.3 NC_003521.1 + 115844 0.66 0.921577
Target:  5'- -cGCugCugCGCCGCGU--GGAGGGc -3'
miRNA:   3'- aaUGugGugGCGGUGCGagCCUUCUu -5'
14105 5' -56.3 NC_003521.1 + 105053 0.66 0.941667
Target:  5'- -aGCGCCACUGCCGCcaccGCcuUCGGucccGGGAa -3'
miRNA:   3'- aaUGUGGUGGCGGUG----CG--AGCCu---UCUU- -5'
14105 5' -56.3 NC_003521.1 + 109045 0.66 0.92695
Target:  5'- gUACACC-CUGCUGCGCUCGcugcGGAu -3'
miRNA:   3'- aAUGUGGuGGCGGUGCGAGCcu--UCUu -5'
14105 5' -56.3 NC_003521.1 + 191186 0.66 0.915972
Target:  5'- -aGCGCCACUGCCcccCGCU-GGAccAGGAg -3'
miRNA:   3'- aaUGUGGUGGCGGu--GCGAgCCU--UCUU- -5'
14105 5' -56.3 NC_003521.1 + 213299 0.66 0.921577
Target:  5'- cUACGCCACCGUgGgCGCcUCGGGc--- -3'
miRNA:   3'- aAUGUGGUGGCGgU-GCG-AGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 27762 0.66 0.921577
Target:  5'- ---uGCCGuCCGCCgaGCGCggaGGAAGAAa -3'
miRNA:   3'- aaugUGGU-GGCGG--UGCGag-CCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 13875 0.66 0.926423
Target:  5'- -gGCGgCGCCGCCAuggauuuCGC-CGGggGGc -3'
miRNA:   3'- aaUGUgGUGGCGGU-------GCGaGCCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 169422 0.66 0.921577
Target:  5'- -gGgGCCGCCGCCuCGCUcacgCGGAcGAc -3'
miRNA:   3'- aaUgUGGUGGCGGuGCGA----GCCUuCUu -5'
14105 5' -56.3 NC_003521.1 + 163117 0.66 0.915972
Target:  5'- -cACgACCACCGCCGCcucCUCGGGc--- -3'
miRNA:   3'- aaUG-UGGUGGCGGUGc--GAGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 144942 0.66 0.941667
Target:  5'- -cGCGUCGCCGCgCugGCUCGcGAcGAAg -3'
miRNA:   3'- aaUGUGGUGGCG-GugCGAGC-CUuCUU- -5'
14105 5' -56.3 NC_003521.1 + 156757 0.66 0.934079
Target:  5'- ---gACCAUCGCCAagagccagggccucuCGCUCGaGAAGGu -3'
miRNA:   3'- aaugUGGUGGCGGU---------------GCGAGC-CUUCUu -5'
14105 5' -56.3 NC_003521.1 + 157285 0.66 0.92695
Target:  5'- -gGCaACgGCgGCCGCGUaCGGggGGAg -3'
miRNA:   3'- aaUG-UGgUGgCGGUGCGaGCCuuCUU- -5'
14105 5' -56.3 NC_003521.1 + 137624 0.66 0.915972
Target:  5'- -gACGCCuACCGCuCGCGCaucgCGGucGAGu -3'
miRNA:   3'- aaUGUGG-UGGCG-GUGCGa---GCCuuCUU- -5'
14105 5' -56.3 NC_003521.1 + 33341 0.66 0.932088
Target:  5'- --cCACCACCucguccacguaGUCGCGCUC-GAAGAAg -3'
miRNA:   3'- aauGUGGUGG-----------CGGUGCGAGcCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 54176 0.66 0.932088
Target:  5'- --cCGCCACCGCCGCGCgacGucGAc -3'
miRNA:   3'- aauGUGGUGGCGGUGCGagcCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 240475 0.66 0.94121
Target:  5'- -gGCGCCGCCuccggcaGCuCACGCUUGGuuGGc -3'
miRNA:   3'- aaUGUGGUGG-------CG-GUGCGAGCCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 202409 0.66 0.936994
Target:  5'- gUUGCAgCaACCGCC-CGUUCGG-GGAAc -3'
miRNA:   3'- -AAUGUgG-UGGCGGuGCGAGCCuUCUU- -5'
14105 5' -56.3 NC_003521.1 + 192034 0.66 0.921577
Target:  5'- cUGCACCGCCGgCGUGCgCGGcAGAc -3'
miRNA:   3'- aAUGUGGUGGCgGUGCGaGCCuUCUu -5'
14105 5' -56.3 NC_003521.1 + 198003 0.66 0.932088
Target:  5'- aUACGCCACaGUUGCGUUCGGGGa-- -3'
miRNA:   3'- aAUGUGGUGgCGGUGCGAGCCUUcuu -5'
14105 5' -56.3 NC_003521.1 + 92455 0.66 0.932088
Target:  5'- -cGCACC-CCGCUcggcuugccCGCUCGGggGu- -3'
miRNA:   3'- aaUGUGGuGGCGGu--------GCGAGCCuuCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.