miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14105 5' -56.3 NC_003521.1 + 126966 1.04 0.007878
Target:  5'- cUUACACCACCGCCACGCUCGGAAGAAa -3'
miRNA:   3'- -AAUGUGGUGGCGGUGCGAGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 47948 0.81 0.228811
Target:  5'- ---aACCGCCGUCGCGCUCGGAAGc- -3'
miRNA:   3'- aaugUGGUGGCGGUGCGAGCCUUCuu -5'
14105 5' -56.3 NC_003521.1 + 168296 0.79 0.283066
Target:  5'- --uCGCCGCCGCCuccgcaGCUCGGAGGAGa -3'
miRNA:   3'- aauGUGGUGGCGGug----CGAGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 100705 0.74 0.512576
Target:  5'- -gGCGCCGCCGCgGcCGCUgaUGGAGGAGg -3'
miRNA:   3'- aaUGUGGUGGCGgU-GCGA--GCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 21182 0.74 0.551644
Target:  5'- -cACuCCGCCGagaCGCGUUCGGAGGGAg -3'
miRNA:   3'- aaUGuGGUGGCg--GUGCGAGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 17455 0.74 0.551644
Target:  5'- ---aACCGCgGCaGCGCUCGGAGGAGa -3'
miRNA:   3'- aaugUGGUGgCGgUGCGAGCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 120282 0.74 0.551644
Target:  5'- -aGCACCgggguugaGCCaCCGCGCUCGGggGGu -3'
miRNA:   3'- aaUGUGG--------UGGcGGUGCGAGCCuuCUu -5'
14105 5' -56.3 NC_003521.1 + 130760 0.73 0.581527
Target:  5'- -gGCGCgAgCGCCGCGC-CGGggGAGc -3'
miRNA:   3'- aaUGUGgUgGCGGUGCGaGCCuuCUU- -5'
14105 5' -56.3 NC_003521.1 + 144180 0.73 0.601636
Target:  5'- -gGCGCCGCCuGCCGCGCgCuGGAGAAc -3'
miRNA:   3'- aaUGUGGUGG-CGGUGCGaGcCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 103743 0.72 0.631947
Target:  5'- -cGCAgCACCGCCGCGUggUGGAAGu- -3'
miRNA:   3'- aaUGUgGUGGCGGUGCGa-GCCUUCuu -5'
14105 5' -56.3 NC_003521.1 + 72287 0.72 0.642061
Target:  5'- -aGCGCCGCCGCCGCGCU-GGc---- -3'
miRNA:   3'- aaUGUGGUGGCGGUGCGAgCCuucuu -5'
14105 5' -56.3 NC_003521.1 + 226841 0.72 0.652167
Target:  5'- -cGC-CCGCCGCCGCGC-CGGGcAGGc -3'
miRNA:   3'- aaUGuGGUGGCGGUGCGaGCCU-UCUu -5'
14105 5' -56.3 NC_003521.1 + 12117 0.72 0.662258
Target:  5'- -cAUGCCGCCGCCGCGCuccuUCGGGu--- -3'
miRNA:   3'- aaUGUGGUGGCGGUGCG----AGCCUucuu -5'
14105 5' -56.3 NC_003521.1 + 56246 0.72 0.662258
Target:  5'- aUUACACCGugaCGCCGCGCgaagacaaGGAGGAGa -3'
miRNA:   3'- -AAUGUGGUg--GCGGUGCGag------CCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 182099 0.72 0.672325
Target:  5'- cUGCACCGCCGCCugGagaCGGuGGGc -3'
miRNA:   3'- aAUGUGGUGGCGGugCga-GCCuUCUu -5'
14105 5' -56.3 NC_003521.1 + 140121 0.71 0.68236
Target:  5'- -cACAgCGCCGCCACGUUgGuGAAGGc -3'
miRNA:   3'- aaUGUgGUGGCGGUGCGAgC-CUUCUu -5'
14105 5' -56.3 NC_003521.1 + 233739 0.71 0.692354
Target:  5'- -gACGCCGCCGCCGCGuCUgcuucuucucacCGGggGc- -3'
miRNA:   3'- aaUGUGGUGGCGGUGC-GA------------GCCuuCuu -5'
14105 5' -56.3 NC_003521.1 + 129235 0.71 0.696339
Target:  5'- -gGCGCCGCUgGCCACGCgcggcaccuggaugUGGAAGAGc -3'
miRNA:   3'- aaUGUGGUGG-CGGUGCGa-------------GCCUUCUU- -5'
14105 5' -56.3 NC_003521.1 + 156073 0.71 0.722009
Target:  5'- --uCGCCGCCGCCGCGCcCGaGcAAGAc -3'
miRNA:   3'- aauGUGGUGGCGGUGCGaGC-C-UUCUu -5'
14105 5' -56.3 NC_003521.1 + 124750 0.7 0.741416
Target:  5'- -cGCugCACuCGCUGCGCcUGGAAGAGc -3'
miRNA:   3'- aaUGugGUG-GCGGUGCGaGCCUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.